RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 ADAT1Q9BUB4 502 aaKnown RBP0.53□□□□□ -2.32
VPS50-217ENST00000485140 PARVAQ9NVD7 372 aa0.53□□□□□ -2.32
VPS50-217ENST00000485140 KLK5Q9Y337 293 aaPredicted RBP0.53□□□□□ -2.32
VPS50-217ENST00000485140 MICAL3Q7RTP6 2002 aa0.53□□□□□ -2.32
VPS50-217ENST00000485140 PCDH15Q96QU1 1955 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 DSCAMO60469 2012 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 INTS1Q8N201 2190 aaKnown RBP0.52□□□□□ -2.33
VPS50-217ENST00000485140 IGKV1-9A0A0C4DH69 117 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 A0A0J9YW62 118 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 STX10O60499 249 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 SCN2BO60939 215 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 CIAO1O76071 339 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 MT-CO2P00403 227 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 TPM1P09493 284 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 SYT1P21579 422 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 LCN1P31025 176 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 CA5AP35218 305 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 TPI1P60174 286 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 TMEM267Q0VDI3 215 aaPredicted RBP0.52□□□□□ -2.33
VPS50-217ENST00000485140 LRRC75BQ2VPJ9 315 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 C9orf64Q5T6V5 341 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 SPATA31B1PQ5VZV4 182 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 C7orf65Q6ZTY9 151 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 SPATA12Q7Z6I5 190 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 NAA40Q86UY6 237 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 OR1L8Q8NGR8 309 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 ZNF675Q8TD23 568 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 RNASEH2CQ8TDP1 164 aaKnown RBP0.52□□□□□ -2.33
VPS50-217ENST00000485140 SFRP2Q96HF1 295 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 AGPAT3Q9NRZ7 376 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 CFAP45Q9UL16 551 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 POFUT2Q9Y2G5 429 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 POLR3HQ9Y535 204 aaPredicted RBP0.52□□□□□ -2.33
VPS50-217ENST00000485140 MYH11P35749 1972 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 NUMA1Q14980 2115 aa0.52□□□□□ -2.33
VPS50-217ENST00000485140 DIDO1Q9BTC0 2240 aaKnown RBP0.52□□□□□ -2.33
VPS50-217ENST00000485140 FBN2P35556 2912 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 IGHV1-18A0A0C4DH31 117 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 A0A1B0GW54 56 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 TRAPPC13A5PLN9 417 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 OR6C6A6NF89 314 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 METTL15A6NJ78 407 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 H7C2G1 150 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 PLA2G10O15496 165 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 ATP8B1O43520 1251 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 ORC5O43913 435 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 GP1BAP07359 652 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 PTPRBP23467 1997 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 KDELR2P33947 212 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 REG1BP48304 166 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 NUP160Q12769 1436 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 GNA13Q14344 377 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 EBPQ15125 230 aaKnown RBP0.51□□□□□ -2.33
VPS50-217ENST00000485140 SURF2Q15527 256 aaPredicted RBP0.51□□□□□ -2.33
VPS50-217ENST00000485140 LGALS9BQ3B8N2 356 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 DNAL1Q4LDG9 190 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 CRLF3Q8IUI8 442 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 C1orf174Q8IYL3 243 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 C17orf78Q8N4C9 275 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 DLG5Q8TDM6 1919 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 ODF3Q96PU9 254 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 RBP7Q96R05 134 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 NMNAT3Q96T66 252 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 MED10Q9BTT4 135 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 HDGFL3Q9Y3E1 203 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 SNURFQ9Y675 71 aa0.51□□□□□ -2.33
VPS50-217ENST00000485140 ROS1P08922 2347 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 BRWD1Q9NSI6 2320 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 DICER1Q9UPY3 1922 aaKnown RBP0.5□□□□□ -2.33
VPS50-217ENST00000485140 A0A087WUU8 490 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 TRAV38-1A0A0B4J264 116 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 ZNF879B4DU55 563 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 M0R381 172 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 HCRTO43612 131 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 HLA-DQB2P05538 268 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 FKBP1AP62942 108 aaKnown RBP0.5□□□□□ -2.33
VPS50-217ENST00000485140 HPCAP84074 193 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 FABP5Q01469 135 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 EMX1Q04741 257 aaPredicted RBP0.5□□□□□ -2.33
VPS50-217ENST00000485140 SMAGPQ0VAQ4 97 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 Q1T7F1 81 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 ARHGAP11BQ3KRB8 267 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 FAM45BPQ6NSW5 357 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 COPS6Q7L5N1 327 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 BLIDQ8IZY5 108 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 ZNF514Q96K75 400 aaPredicted RBP0.5□□□□□ -2.33
VPS50-217ENST00000485140 IMMP2LQ96T52 175 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 MROQ9BYG7 248 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 ZNHIT6Q9NWK9 470 aaKnown RBP0.5□□□□□ -2.33
VPS50-217ENST00000485140 C1orf109Q9NX04 203 aa0.5□□□□□ -2.33
VPS50-217ENST00000485140 PCYT1BQ9Y5K3 369 aaPredicted RBP0.5□□□□□ -2.33
VPS50-217ENST00000485140 MYOFQ9NZM1 2061 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 TRAV7A0A075B6U4 112 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 TEX50A0A1B0GTY4 177 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 C5orf49A4QMS7 147 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 F8VZ95 297 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 CCRL2O00421 344 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 NPPAP01160 153 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 ATP5G1P05496 136 aa0.49□□□□□ -2.33
VPS50-217ENST00000485140 MIPP30301 263 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms