RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TCF23Q7RTU1 214 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 OR1L1Q8NH94 360 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 RAB1CQ92928 201 aa11.18□□□□□ -0.62
USP40-214ENST00000483519 TRAV39A0A0B4J263 110 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 A0A1W2PQM1 296 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 GRIFINA4D1Z8 144 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 PATE3B3GLJ2 98 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 MRPL33O75394 65 aaKnown RBP11.17□□□□□ -0.62
USP40-214ENST00000483519 ZNF883P0CG24 379 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 EGR1P18146 543 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 UBE2G2P60604 165 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 ZNF497Q6ZNH5 498 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 ZBTB34Q8NCN2 500 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 GMPPAQ96IJ6 420 aaPredicted RBP11.17□□□□□ -0.62
USP40-214ENST00000483519 OR2J1Q9GZK6 312 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 PAM16Q9Y3D7 125 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 ODAMA1E959 279 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 SS18L1O75177 396 aaPredicted RBP11.17□□□□□ -0.62
USP40-214ENST00000483519 UMODP07911 640 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 CRISP2P16562 243 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 EPHA8P29322 1005 aaPredicted RBP11.17□□□□□ -0.62
USP40-214ENST00000483519 G6PCP35575 357 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 HLA-BQ31612 363 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 MYPOPQ86VE0 399 aaPredicted RBP11.17□□□□□ -0.62
USP40-214ENST00000483519 ZNF645Q8N7E2 425 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 OR5AU1Q8NGC0 362 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 HSPB9Q9BQS6 159 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 DERL1Q9BUN8 251 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 MUC3AQ02505 3323 aa11.17□□□□□ -0.62
USP40-214ENST00000483519 A0A096LPE4 126 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 A0A1W2PPV4 95 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 A0A1W2PPZ6 126 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 ZG16O60844 167 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 P0C879 139 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 Q6P435 159 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 ASCL5Q7RTU5 278 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 NINJ1Q92982 152 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 GPR179Q6PRD1 2367 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 RBFOX2O43251 390 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP40-214ENST00000483519 IL6RP08887 468 aaPredicted RBP11.16□□□□□ -0.62
USP40-214ENST00000483519 DEFA4P12838 97 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 CATR1Q13166 79 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 BATFQ16520 125 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 COL5A1-AS1Q5SY13 56 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 ZNF114Q8NC26 417 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 OR10G8Q8NGN5 311 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 LINC00470Q9BZP3 86 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 OTOGLQ3ZCN5 2332 aa11.16□□□□□ -0.62
USP40-214ENST00000483519 A0A0G2JMM0 328 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 A0A1W2PPB8 328 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 A0A1W2PRS3 328 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 KIR3DP1A8MWS1 328 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 J3QT63 122 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 GFRA3O60609 400 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 RAMP3O60896 148 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 TRAPPC6AO75865 159 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 SERF1AO75920 110 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 CD46P15529 392 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 TIMP3P35625 211 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 LHX2P50458 406 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 MRPS11P82912 194 aaKnown RBP11.15□□□□□ -0.62
USP40-214ENST00000483519 WIPI1Q5MNZ9 446 aaPredicted RBP11.15□□□□□ -0.62
USP40-214ENST00000483519 VN1R17PQ8TDU5 208 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 SAMD10Q9BYL1 202 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 TP53TG3Q9ULZ0 132 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 PGPEP1LA6NFU8 196 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 SIRPB1O00241 398 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 ZNHIT1O43257 154 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 NGFP01138 241 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 CD33P20138 364 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 ZNF90Q03938 601 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 ZNF816Q0VGE8 651 aaPredicted RBP11.15□□□□□ -0.62
USP40-214ENST00000483519 TDRG1Q3Y452 100 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 C9orf135Q5VTT2 229 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 AGBL5Q8NDL9 886 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 UBALD1Q8TB05 177 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 IFI44Q8TCB0 444 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 ZDHHC16Q969W1 377 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 MRPL18Q9H0U6 180 aaKnown RBP11.15□□□□□ -0.62
USP40-214ENST00000483519 MBNL3Q9NUK0 354 aaKnown RBP11.15□□□□□ -0.62
USP40-214ENST00000483519 ZNF407Q9C0G0 2248 aa11.15□□□□□ -0.62
USP40-214ENST00000483519 LNP1A1A4G5 178 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 SMAD7O15105 426 aaKnown RBP11.15□□□□□ -0.63
USP40-214ENST00000483519 RBMXL2O75526 392 aaKnown RBP11.15□□□□□ -0.63
USP40-214ENST00000483519 RHBDL1O75783 438 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 BMP5P22003 454 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 CBLN1P23435 193 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 CD82P27701 267 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 OR5I1Q13606 314 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 LRP11Q86VZ4 500 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 BAGE3Q86Y29 109 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 BAGE2Q86Y30 109 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 OR4B1Q8NGF8 309 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 PRRG4Q9BZD6 226 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 OCIAD1Q9NX40 245 aa11.15□□□□□ -0.63
USP40-214ENST00000483519 CABIN1Q9Y6J0 2220 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 TRAV38-1A0A0B4J264 116 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 RAB29O14966 203 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 SLC25A17O43808 307 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 OR2H2O95918 312 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms