RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 HARBI1Q96MB7 349 aa12.84□□□□□ -0.35
VIM-204ENST00000478746 RIMS4Q9H426 269 aaPredicted RBP12.84□□□□□ -0.35
VIM-204ENST00000478746 PLEKHJ1Q9NW61 149 aa12.84□□□□□ -0.35
VIM-204ENST00000478746 SELENOKQ9Y6D0 94 aa12.84□□□□□ -0.35
VIM-204ENST00000478746 PNMA8CA0A1B0GUJ8 204 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 SHOXO15266 292 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 SPRY2O43597 315 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 UBBP0CG47 229 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 CBLN1P23435 193 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 RPS27AP62979 156 aaKnown RBP12.83□□□□□ -0.36
VIM-204ENST00000478746 ANKRD55Q3KP44 614 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 ZNF485Q8NCK3 441 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 KCNG3Q8TAE7 436 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 TP53TG1Q9Y2A0 90 aa12.83□□□□□ -0.36
VIM-204ENST00000478746 TRBV6-6A0A0A6YYG2 114 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 TRBV9A0A0B4J1U6 114 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 SRRM4A7MD48 611 aaKnown RBP12.82□□□□□ -0.36
VIM-204ENST00000478746 PPP5D1E7EU14 171 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 LGALS9O00182 355 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 GGCTO75223 188 aaKnown RBP12.82□□□□□ -0.36
VIM-204ENST00000478746 OR2C1O95371 312 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 HLA-AP01891 365 aaKnown RBP12.82□□□□□ -0.36
VIM-204ENST00000478746 SCTP09683 121 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 ATF4P18848 351 aaPredicted RBP12.82□□□□□ -0.36
VIM-204ENST00000478746 TAS2R43P59537 309 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 HLA-DRB3P79483 266 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 CBX3Q13185 183 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 TNXAQ16473 311 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 MRGPRG-AS1Q2M3A8 158 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 ZNF57Q68EA5 555 aaPredicted RBP12.82□□□□□ -0.36
VIM-204ENST00000478746 TMEM61Q8N0U2 210 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.82□□□□□ -0.36
VIM-204ENST00000478746 CNBD2Q96M20 576 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 NICN1Q9BSH3 213 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 TMEM59Q9BXS4 323 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 MGAT4AQ9UM21 535 aa12.82□□□□□ -0.36
VIM-204ENST00000478746 MAPK3P27361 379 aaPredicted RBP12.81□□□□□ -0.36
VIM-204ENST00000478746 ZNF45Q02386 682 aa12.81□□□□□ -0.36
VIM-204ENST00000478746 FAM209BQ5JX69 171 aa12.81□□□□□ -0.36
VIM-204ENST00000478746 Q6ZWC4 215 aa12.81□□□□□ -0.36
VIM-204ENST00000478746 TEX45Q8NA69 505 aa12.81□□□□□ -0.36
VIM-204ENST00000478746 NECAP1Q8NC96 275 aa12.81□□□□□ -0.36
VIM-204ENST00000478746 PHLDA1Q8WV24 401 aaPredicted RBP12.81□□□□□ -0.36
VIM-204ENST00000478746 SRSF12Q8WXF0 261 aaKnown RBP12.81□□□□□ -0.36
VIM-204ENST00000478746 HDHD3Q9BSH5 251 aaPredicted RBP12.81□□□□□ -0.36
VIM-204ENST00000478746 SCAF4O95104 1147 aaKnown RBP12.8□□□□□ -0.36
VIM-204ENST00000478746 CELP19835 753 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 TAGLNQ01995 201 aaKnown RBP12.8□□□□□ -0.36
VIM-204ENST00000478746 PRSS8Q16651 343 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 VMA21Q3ZAQ7 101 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 TM4SF20Q53R12 229 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 TMEM177Q53S58 311 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 GPHB5Q86YW7 130 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 FBLIM1Q8WUP2 373 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 CACNG8Q8WXS5 425 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 TM2D1Q9BX74 207 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 RDH8Q9NYR8 311 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 AK3Q9UIJ7 227 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 DMRT1Q9Y5R6 373 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 VPS13DQ5THJ4 4388 aa12.8□□□□□ -0.36
VIM-204ENST00000478746 DENRO43583 198 aaKnown RBP12.79□□□□□ -0.36
VIM-204ENST00000478746 OR2J3O76001 311 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 CD1AP06126 327 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 MAP2K4P45985 399 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 APOC4P55056 127 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 ST3GAL4Q11206 333 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 RTL8BQ17RB0 113 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 DEFB135Q30KP9 77 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 C15orf32Q32M92 178 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 TMEM217Q8N7C4 229 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 ACOT12Q8WYK0 555 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 Q9N2K0 584 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 MLXQ9UH92 298 aa12.79□□□□□ -0.36
VIM-204ENST00000478746 ZNF320A2RRD8 509 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 EFCAB10A6NFE3 127 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 RRASP10301 218 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 UBE2KP61086 200 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 FAM106AQ4KMX7 169 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 IDO2Q6ZQW0 420 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 TTC9CQ8N5M4 171 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 UXS1Q8NBZ7 420 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 BPIFB6Q8NFQ5 453 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 GGHQ92820 318 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 SPIN2AQ99865 258 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 SPIN2BQ9BPZ2 258 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 SDHAF2Q9NX18 166 aa12.78□□□□□ -0.36
VIM-204ENST00000478746 IGKV1-6A0A0C4DH72 117 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 UBE2CO00762 179 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 SOCS1O15524 211 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 ACTL6BO94805 426 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 UNC119Q13432 240 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 C1orf100Q5SVJ3 147 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 GLT8D1Q68CQ7 371 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 LAIR2Q6ISS4 152 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 SLC25A42Q86VD7 318 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 OR2D2Q9H210 308 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 KCNK15Q9H427 330 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 PLCXD1Q9NUJ7 323 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 SCN3BQ9NY72 215 aa12.77□□□□□ -0.37
VIM-204ENST00000478746 A0A0A6YYD4 124 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms