RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 MRPL49Q13405 166 aaKnown RBP11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 H2BFWTQ7Z2G1 175 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 ZCCHC14Q8WYQ9 949 aaKnown RBP11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 NINJ1Q92982 152 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 SFRP2Q96HF1 295 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 MS4A10Q96PG2 267 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 PILRBQ9UKJ0 227 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 ARL2-SNX15V9GYD0 113 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 SETXQ7Z333 2677 aaKnown RBP11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 RHBDL1O75783 438 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 OR4A8P0C604 315 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 CCL2P13500 99 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 CA6P23280 308 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 MPLP40238 635 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 TDGF1P3P51864 188 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 GNB1P62873 340 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 TFF3Q07654 80 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 Q0VFX4 171 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 COX19Q49B96 90 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 PDLIM3Q53GG5 364 aaPredicted RBP11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 DCAF10Q5QP82 559 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 SCCPDHQ8NBX0 429 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 OR52E5Q8NH55 327 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 PRR7Q8TB68 274 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 ZPBPQ9BS86 351 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 SNHG12Q9BXW3 62 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 OR2D2Q9H210 308 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 HES4Q9HCC6 221 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 CLN8Q9UBY8 286 aa11.35□□□□□ -0.59
HLA-DMA-208ENST00000477541 A0A1W2PPV4 95 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 ZNF503-AS2A6NEH8 195 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 ZG16O60844 167 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 NXPH2O95156 264 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 CXorf1O96002 111 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 CCL4P13236 92 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 NPPCP23582 126 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 G6PCP35575 357 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 TMPRSS3P57727 454 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 TBC1D28Q2M2D7 210 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 PMS2CLQ68D20 193 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 TEX38Q6PEX7 206 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 OR2M7Q8NG81 312 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 CMTM2Q8TAZ6 248 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 ABI3Q9P2A4 366 aa11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 POLR3KQ9Y2Y1 108 aaPredicted RBP11.34□□□□□ -0.59
HLA-DMA-208ENST00000477541 PINLYPA6NC86 204 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 C1QTNF9BB2RNN3 333 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 S1PR2O95136 353 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 MT-CO2P00403 227 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 BTF3P20290 206 aaKnown RBP11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 KITLGP21583 273 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 CD1BP29016 333 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 OTX2P32243 289 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 CHRNA7P36544 502 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 OR1C1Q15619 314 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 TEX43Q6ZNM6 134 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 MCEMP1Q8IX19 187 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 GATAD1Q8WUU5 269 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 CEP295Q9C0D2 2601 aa11.33□□□□□ -0.6
HLA-DMA-208ENST00000477541 C9JCJ5 164 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 TNFSF13O75888 250 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 HAND1O96004 215 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 STAG3L2P0CL84 134 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 STAG3L3P0CL85 134 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 PMP22Q01453 160 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 TRIP6Q15654 476 aaKnown RBP11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 PRR18Q8N4B5 295 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 Q8N7P7 452 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 OR10G8Q8NGN5 311 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 OR1L1Q8NH94 360 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 SGMS2Q8NHU3 365 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 BCL2L2Q92843 193 aaPredicted RBP11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 PARD6AQ9NPB6 346 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 TMEM106BQ9NUM4 274 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 ASPMQ8IZT6 3477 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 ARHGAP21Q5T5U3 1957 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 ZZEF1O43149 2961 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 SDK2Q58EX2 2172 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 C15orf62A8K5M9 175 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 IQCF6A8MYZ5 107 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 C12orf77C9JDV5 145 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 RAMP3O60896 148 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 LILRA1O75019 489 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 NEURL1O76050 574 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 TNFSF15O95150 251 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 RPLP1P05386 114 aaKnown RBP11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 TMEM183BQ1AE95 376 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 ZNF766Q5HY98 468 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 DCAF12Q5T6F0 453 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 C9orf135Q5VTT2 229 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 C11orf52Q96A22 123 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 TUBG2Q9NRH3 451 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 IL36BQ9NZH7 164 aa11.32□□□□□ -0.6
HLA-DMA-208ENST00000477541 ESPL1Q14674 2120 aa11.31□□□□□ -0.6
HLA-DMA-208ENST00000477541 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.31□□□□□ -0.6
HLA-DMA-208ENST00000477541 A8MXE2 369 aa11.31□□□□□ -0.6
HLA-DMA-208ENST00000477541 IFNL4K9M1U5 179 aa11.31□□□□□ -0.6
HLA-DMA-208ENST00000477541 CDIPTO14735 213 aa11.31□□□□□ -0.6
HLA-DMA-208ENST00000477541 HMGB3O15347 200 aaKnown RBP11.31□□□□□ -0.6
HLA-DMA-208ENST00000477541 RBFOX2O43251 390 aaKnown RBP eCLIP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms