RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RAB24Q969Q5 203 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 HIST1H2BAQ96A08 127 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 RBP4P02753 201 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 TPPP2P59282 170 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 HSPE1P61604 102 aaKnown RBP12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF324BQ6AW86 544 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ACSM6Q6P461 480 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF705AQ6ZN79 300 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ANAPC10Q9UM13 185 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 NAPSAO96009 420 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 C16orf82Q7Z2V1 217 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 OR13A1Q8NGR1 328 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 AUP1Q9Y679 476 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 LOC102723971A0A1B0GUV8 181 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 CHEK1O14757 476 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 LRRC75BQ2VPJ9 315 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF880Q6PDB4 577 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 MDS2Q8NDY4 140 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 AP1S3Q96PC3 154 aa12.36□□□□□ -0.43
HDAC6-220ENST00000477528 ZNF729A6NN14 1252 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-220ENST00000477528 SLC25A5P05141 298 aaKnown RBP12.35□□□□□ -0.43
HDAC6-220ENST00000477528 ZNRF1Q8ND25 227 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 DNAJC13O75165 2243 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 SRSF3P84103 164 aaKnown RBP12.35□□□□□ -0.43
HDAC6-220ENST00000477528 OR8B3Q8NGG8 313 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 OR8B2Q96RD0 313 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 NAT8BQ9UHF3 227 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 REG1BP48304 166 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 FAM90A1Q86YD7 464 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 RCC1LQ96I51 464 aaKnown RBP12.35□□□□□ -0.43
HDAC6-220ENST00000477528 TMEM204Q9BSN7 226 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 TCF19Q9Y242 345 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 GVINP1Q7Z2Y8 2422 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 FCN1O00602 326 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 IL18BPO95998 194 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 ORM2P19652 201 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 CSRP1P21291 193 aaKnown RBP12.35□□□□□ -0.43
HDAC6-220ENST00000477528 GNB4Q9HAV0 340 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 INSIG2Q9Y5U4 225 aa12.35□□□□□ -0.43
HDAC6-220ENST00000477528 C17orf98A8MV24 154 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 PTBP3O95758 552 aaKnown RBP12.34□□□□□ -0.43
HDAC6-220ENST00000477528 NTF3P20783 257 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 FAM162BQ5T6X4 162 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 LYL1P12980 280 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 PEAR1Q5VY43 1037 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-220ENST00000477528 RNF138Q8WVD3 245 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 FAM103A1Q9BTL3 118 aaKnown RBP12.34□□□□□ -0.43
HDAC6-220ENST00000477528 PITPNC1Q9UKF7 332 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 NCBP2LA6PVI3 153 aaKnown RBP12.34□□□□□ -0.43
HDAC6-220ENST00000477528 WDR73Q6P4I2 378 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 SMIM15Q7Z3B0 74 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 LEAP2Q969E1 77 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 QTRT1Q9BXR0 403 aaKnown RBP12.34□□□□□ -0.43
HDAC6-220ENST00000477528 WFDC1Q9HC57 220 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 RNF24Q9Y225 148 aa12.34□□□□□ -0.43
HDAC6-220ENST00000477528 CEP250Q9BV73 2442 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 FAM157CP0CG43 387 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 IQCJQ1A5X6 159 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 HELTA6NFD8 242 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 GATCO43716 136 aaKnown RBP12.33□□□□□ -0.44
HDAC6-220ENST00000477528 MIC13Q5XKP0 118 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 ZNF581Q9P0T4 197 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 Q6ZS49 121 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 PDPNQ86YL7 162 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 ZNF525Q8N782 197 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 WDR31Q8NA23 367 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 BLNKQ8WV28 456 aa12.33□□□□□ -0.44
HDAC6-220ENST00000477528 SRP19P09132 144 aaKnown RBP12.32□□□□□ -0.44
HDAC6-220ENST00000477528 CEACAM1P13688 526 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 MC5RP33032 325 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 PMS2P11Q13670 270 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 C10orf113Q5VZT2 155 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 WDR82Q6UXN9 313 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 OR1B1Q8NGR6 318 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 OR4X1Q8NH49 305 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 ELOVL5Q9NYP7 299 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 FAM3BP58499 235 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-220ENST00000477528 OR4F17Q8NGA8 305 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 FUT9Q9Y231 359 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 SPINK4O60575 86 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 NDUFB4O95168 129 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 RPL8P62917 257 aaKnown RBP12.32□□□□□ -0.44
HDAC6-220ENST00000477528 COX19Q49B96 90 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 C9orf152Q5JTZ5 239 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 VKORC1L1Q8N0U8 176 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 OR10J1P30954 320 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 UCNP55089 124 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 ZNF146Q15072 292 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 RPL39P5Q59GN2 51 aa12.32□□□□□ -0.44
HDAC6-220ENST00000477528 PACRGQ96M98 296 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-220ENST00000477528 AURKAIP1Q9NWT8 199 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-220ENST00000477528 NDUFA2O43678 99 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 EIF3GO75821 320 aaKnown RBP eCLIP12.31□□□□□ -0.44
HDAC6-220ENST00000477528 COLCA1Q6ZS62 124 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 ABHD12Q8N2K0 398 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 STXBP6Q8NFX7 210 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 ZDHHC16Q969W1 377 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 CACNA1DQ01668 2161 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 TMEM250H0YL14 139 aa12.31□□□□□ -0.44
HDAC6-220ENST00000477528 TRGC2P03986 189 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms