RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SPATA12	Q7Z6I5	190 aa		1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044	LHFPL1	Q86WI0	220 aa		1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044	LHFPL5	Q8TAF8	219 aa		1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044	RNASE6	Q93091	150 aa	Known RBP	1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044	DERL2	Q9GZP9	239 aa		1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044	TMEM222	Q9H0R3	208 aa		1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044	COL4A1	P02462	1669 aa		1.35	□□□□□ -2.19
PTCD3-209	ENST00000472044		A0A087WUU8	490 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	TRGV5	A0A0B4J1U4	118 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	MDFIC2	A0A1B0GVS7	189 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044		A0A1W2PQD3	144 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	CETN3	O15182	167 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	HLA-DRA	P01903	254 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	PRB1	P04280	392 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	UCHL1	P09936	223 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	C8orf88	P0DMB2	117 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	RPL27A	P46776	148 aa	Known RBP	1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	TBPL1	P62380	186 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	FKBP1A	P62942	108 aa	Known RBP	1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	UAP1	Q16222	522 aa	Predicted RBP	1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	SLC36A2	Q495M3	483 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	DAND5	Q8N907	189 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	ANKRD36BP1	Q96IX9	119 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	PXDNL	A1KZ92	1463 aa		1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	DENND4B	O75064	1496 aa	Predicted RBP	1.34	□□□□□ -2.19
PTCD3-209	ENST00000472044	OTOGL	Q3ZCN5	2332 aa		1.34	□□□□□ -2.2
PTCD3-209	ENST00000472044	MALRD1	Q5VYJ5	2156 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	ZNF860	A6NHJ4	632 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044		C9JCJ5	164 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	BHLHE40	O14503	412 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	KRT75	O95678	551 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	GABRA2	P47869	451 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	CDC34	P49427	236 aa	Predicted RBP	1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	HINT1	P49773	126 aa	Predicted RBP	1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	CTBP2	P56545	445 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	HSP90B2P	Q58FF3	399 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044		Q6ZS52	159 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	NAA40	Q86UY6	237 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	TMEM156	Q8N614	296 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	OR4X2	Q8NGF9	303 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	OR5J2	Q8NH18	312 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	JOSD2	Q8TAC2	188 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	CMTM5	Q96DZ9	223 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	TMEM109	Q9BVC6	243 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	TIMM21	Q9BVV7	248 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	POLR3H	Q9Y535	204 aa	Predicted RBP	1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	ZNF532	Q9HCE3	1301 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	ABCC12	Q96J65	1359 aa		1.33	□□□□□ -2.2
PTCD3-209	ENST00000472044	PRRC2B	Q5JSZ5	2229 aa	Known RBP	1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	DISP1	Q96F81	1524 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044		A0A0A6YYH2	397 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044		A0A1B0GW54	56 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044		A6NJ64	397 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	APOM	O95445	188 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	GNA12	Q03113	381 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	JOSD1	Q15040	202 aa	Predicted RBP	1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	SPACA4	Q8TDM5	124 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	EEF1AKMT1	Q8WVE0	214 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	SFRP2	Q96HF1	295 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	LLPH	Q9BRT6	129 aa	Known RBP	1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	HHLA3	Q9XRX5	114 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	POLR1D	Q9Y2S0	133 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	CPAMD8	Q8IZJ3	1885 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	ABCC11	Q96J66	1382 aa		1.32	□□□□□ -2.2
PTCD3-209	ENST00000472044	GRIN2B	Q13224	1484 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	TMED7-TICAM2	A0A0A6YYA0	188 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	TRAV41	A0A0B4J266	112 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044		J3QQQ9	107 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	SSNA1	O43805	119 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	HLA-DQB2	P05538	268 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	COX5B	P10606	129 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	PEBP1	P30086	187 aa	Known RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	CDK9	P50750	372 aa	Known RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	RPL26	P61254	145 aa	Known RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	ERH	P84090	104 aa	Known RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	RELA	Q04206	551 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	CST9	Q5W186	159 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	SBSN	Q6UWP8	590 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	FAM151B	Q6UXP7	276 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044		Q6ZRN7	208 aa	Predicted RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	GPHB5	Q86YW7	130 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	UBL4B	Q8N7F7	174 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	HAVCR2	Q8TDQ0	301 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	ZNF625	Q96I27	306 aa	Predicted RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	CCL13	Q99616	98 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	RPL26L1	Q9UNX3	145 aa	Known RBP	1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	ATP6V1D	Q9Y5K8	247 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	KIF15	Q9NS87	1388 aa		1.31	□□□□□ -2.2
PTCD3-209	ENST00000472044	GREB1	Q4ZG55	1949 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	RTTN	Q86VV8	2226 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	BPGM	P07738	259 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	IL3	P08700	152 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	IDH3G	P51553	393 aa	Predicted RBP	1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	RAP1GDS1	P52306	607 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	TAS2R20	P59543	309 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	MLLT11	Q13015	90 aa	Predicted RBP	1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	FAM78B	Q5VT40	261 aa		1.3	□□□□□ -2.2
PTCD3-209	ENST00000472044	OR10K2	Q6IF99	312 aa		1.3	□□□□□ -2.2

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