RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 IQCF2Q8IXL9 164 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 ZBTB34Q8NCN2 500 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 CA5BP1Q8WTZ4 195 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 LHX4Q969G2 390 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 TVP23CQ96ET8 276 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 SSX3Q99909 188 aa15.83■□□□□ 0.13
VIM-203ENST00000469543 TET2Q6N021 2002 aaPredicted RBP15.83■□□□□ 0.13
VIM-203ENST00000469543 CUL9Q8IWT3 2517 aa15.83■□□□□ 0.12
VIM-203ENST00000469543 TRAV1-1A0A0B4J248 108 aa15.83■□□□□ 0.12
VIM-203ENST00000469543 M0R1X1 148 aa15.83■□□□□ 0.12
VIM-203ENST00000469543 TMEM41BQ5BJD5 291 aa15.83■□□□□ 0.12
VIM-203ENST00000469543 KDF1Q8NAX2 398 aaPredicted RBP15.83■□□□□ 0.12
VIM-203ENST00000469543 R3HDM4Q96D70 268 aa15.83■□□□□ 0.12
VIM-203ENST00000469543 PSMG3Q9BT73 122 aaPredicted RBP15.83■□□□□ 0.12
VIM-203ENST00000469543 SH3BGRL2Q9UJC5 107 aa15.83■□□□□ 0.12
VIM-203ENST00000469543 ZNF891A8MT65 544 aaPredicted RBP15.82■□□□□ 0.12
VIM-203ENST00000469543 CYB5R3P00387 301 aaPredicted RBP15.82■□□□□ 0.12
VIM-203ENST00000469543 IFNA17P01571 189 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 LOXL3P58215 753 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 SERF2P84101 59 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 DPPA3Q6W0C5 159 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 RBMXL3Q8N7X1 1067 aaKnown RBP15.82■□□□□ 0.12
VIM-203ENST00000469543 MBD3L1Q8WWY6 194 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 SLC39A9Q9NUM3 307 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 ZNRD1Q9P1U0 126 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 FGF7P21781 194 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 ZNF674Q2M3X9 581 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 OR10P1Q8NGE3 313 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 MRPL37Q9BZE1 423 aaKnown RBP15.82■□□□□ 0.12
VIM-203ENST00000469543 WASF3Q9UPY6 502 aa15.82■□□□□ 0.12
VIM-203ENST00000469543 ASH1LQ9NR48 2969 aaKnown RBP15.82■□□□□ 0.12
VIM-203ENST00000469543 PIGBOS1A0A0B4J2F0 54 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 FAM90A26D6RGX4 464 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 MEOX2P50222 304 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 KLF3P57682 345 aaPredicted RBP15.81■□□□□ 0.12
VIM-203ENST00000469543 TCF15Q12870 199 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 MEGF10Q96KG7 1140 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 UNKLQ9H9P5 680 aaKnown RBP15.81■□□□□ 0.12
VIM-203ENST00000469543 OR8U8P0C7N1 319 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 FAM90A1Q86YD7 464 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 TOLLIPQ9H0E2 274 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 HIPK2Q9H2X6 1198 aa15.81■□□□□ 0.12
VIM-203ENST00000469543 CISD1Q9NZ45 108 aaKnown RBP15.81■□□□□ 0.12
VIM-203ENST00000469543 MYOD1P15172 320 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 MDKP21741 143 aaPredicted RBP15.8■□□□□ 0.12
VIM-203ENST00000469543 CD81P60033 236 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 ABHD12Q8N2K0 398 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 HSD17B10Q99714 261 aaKnown RBP15.8■□□□□ 0.12
VIM-203ENST00000469543 YIF1AO95070 293 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 GZMHP20718 246 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 HTD2P86397 168 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 FFAR4Q5NUL3 377 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 TIMM23BQ5SRD1 257 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 OR10G4Q8NGN3 311 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 OR10G9Q8NGN4 311 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 OR10G7Q8NGN6 311 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 NANPQ8TBE9 248 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 NPCDR1Q9BY65 106 aa15.8■□□□□ 0.12
VIM-203ENST00000469543 A0A1B0GWJ7 208 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 C15orf62A8K5M9 175 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 RRHO14718 337 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 RAB29O14966 203 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 CYB5BO43169 146 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 NKX6-1P78426 367 aaPredicted RBP15.79■□□□□ 0.12
VIM-203ENST00000469543 Q6ZS92 163 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 SNIP1Q8TAD8 396 aaKnown RBP15.79■□□□□ 0.12
VIM-203ENST00000469543 IFI27L2Q9H2X8 130 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 MGST3O14880 152 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 MMP23AO75900 390 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 RPUSD4Q96CM3 377 aaKnown RBP15.79■□□□□ 0.12
VIM-203ENST00000469543 GCM1Q9NP62 436 aa15.79■□□□□ 0.12
VIM-203ENST00000469543 UBE2CO00762 179 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 IGHV2-5P01817 119 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 ADH4P08319 380 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 GLRXP35754 106 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 ZNF66Q6ZN08 573 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 LHBP01229 141 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 CCL8P80075 99 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 CLEC12BQ2HXU8 276 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 CT45A1Q5HYN5 189 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 CT45A3Q8NHU0 189 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 SNX22Q96L94 193 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 CCL13Q99616 98 aa15.78■□□□□ 0.12
VIM-203ENST00000469543 TRAV38-1A0A0B4J264 116 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 SMCO3A2RU48 225 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 C17orf58Q2M2W7 97 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 PRAMEF5Q5TYX0 476 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 IGFL3Q6UXB1 125 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 SLC35E3Q7Z769 313 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 FAM216BQ8N7L0 139 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 RAB24Q969Q5 203 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 TMEM147Q9BVK8 224 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 CALYQ9NYX4 217 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 OR6C3Q9NZP0 311 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 VAX2Q9UIW0 290 aa15.77■□□□□ 0.12
VIM-203ENST00000469543 DSCAML1Q8TD84 2053 aa15.77■□□□□ 0.11
VIM-203ENST00000469543 SOX15O60248 233 aa15.77■□□□□ 0.11
VIM-203ENST00000469543 GYPAP02724 150 aa15.77■□□□□ 0.11
VIM-203ENST00000469543 GNG10P50151 68 aa15.77■□□□□ 0.11
VIM-203ENST00000469543 MRGPRGQ86SM5 289 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms