RNA–Protein interactions for RNA: ENST00000465155.5

ATF3-208, Transcript of activating transcription factor 3, human

TSL 2

Gene ATF3, Length 1,626 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATF3-208	ENST00000465155	UXS1	Q8NBZ7	420 aa		10.8	□□□□□ -0.68
ATF3-208	ENST00000465155	CD300LF	Q8TDQ1	290 aa		10.8	□□□□□ -0.68
ATF3-208	ENST00000465155	MITD1	Q8WV92	249 aa		10.8	□□□□□ -0.68
ATF3-208	ENST00000465155	PHB2	Q99623	299 aa		10.8	□□□□□ -0.68
ATF3-208	ENST00000465155	CSPG4	Q6UVK1	2322 aa		10.8	□□□□□ -0.68
ATF3-208	ENST00000465155	CRYZL1	O95825	349 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	MC5R	P33032	325 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	LPAR6	P43657	344 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	ARHGDIB	P52566	201 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	TAGLN	Q01995	201 aa	Known RBP	10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	C12orf45	Q8N5I9	185 aa	Predicted RBP	10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	TCTEX1D1	Q8N7M0	179 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	OR4S2	Q8NH73	311 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	COQ8A	Q8NI60	647 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	C22orf15	Q8WYQ4	148 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	CFHR4	Q92496	578 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	OR51J1	Q9H342	316 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	WASHC3	Q9Y3C0	194 aa		10.79	□□□□□ -0.68
ATF3-208	ENST00000465155	SSNA1	O43805	119 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	S1PR2	O95136	353 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	CDS2	O95674	445 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	IGKV1-16	P04430	117 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	FBP1	P09467	338 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	RRAS	P10301	218 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	HNF1A	P20823	631 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	SRPX	P78539	464 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	TMEM268	Q5VZI3	342 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	CLEC9A	Q6UXN8	241 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	PDPN	Q86YL7	162 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	ZNF695	Q8IW36	515 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	BCL6B	Q8N143	479 aa	Predicted RBP	10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	LGI3	Q8N145	548 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	LHFPL5	Q8TAF8	219 aa		10.78	□□□□□ -0.68
ATF3-208	ENST00000465155	RBFOX2	O43251	390 aa	Known RBP eCLIP	10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	HPRT1	P00492	218 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	IGKV1-39	P01597	117 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	IGKV1D-39	P04432	117 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	RPA2	P15927	270 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	CD24	P25063	80 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	CD1B	P29016	333 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	SRP14	P37108	136 aa	Known RBP	10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	RAB13	P51153	203 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	HABP2	Q14520	560 aa	Predicted RBP	10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	DHRS7B	Q6IAN0	325 aa	Predicted RBP	10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	RBPMS	Q93062	196 aa	Known RBP	10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	TMEM56	Q96MV1	263 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	MEGF9	Q9H1U4	602 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	TMEM56-RWDD3	S4R434	201 aa		10.77	□□□□□ -0.68
ATF3-208	ENST00000465155	MDFIC2	A0A1B0GVS7	189 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	VENTX	O95231	258 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	IGKV1D-33	P01593	117 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	IGKV1-33	P01594	117 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	BRS3	P32247	399 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	DEFB112	Q30KQ8	113 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	C9orf139	Q6ZV77	190 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	SELENOH	Q8IZQ5	122 aa	Known RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	SLC35G3	Q8N808	338 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	FLYWCH2	Q96CP2	140 aa	Known RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	PLEKHA2	Q9HB19	425 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	TMEM160	Q9NX00	188 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	ZFHX3	Q15911	3703 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155		A0A0B4J2A0	478 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	SHOX	O15266	292 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	SNRNP70	P08621	437 aa	Known RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	G6PC	P35575	357 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	RPS16	P62249	146 aa	Known RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	HES1	Q14469	280 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	TMEM177	Q53S58	311 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155		Q71RC1	249 aa	Predicted RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	LYZL2	Q7Z4W2	148 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	LRTM2	Q8N967	370 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	OR4C13	Q8NGP0	309 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	OSR1	Q8TAX0	266 aa	Predicted RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	IL22RA2	Q969J5	263 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	HARBI1	Q96MB7	349 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	MED28	Q9H204	178 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	GSX1	Q9H4S2	264 aa	Predicted RBP	10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	SHPK	Q9UHJ6	478 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	TLN2	Q9Y4G6	2542 aa		10.76	□□□□□ -0.69
ATF3-208	ENST00000465155	DBX1	A6NMT0	343 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	MARCH11	A6NNE9	402 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	PFDN1	O60925	122 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	ADAP1	O75689	374 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	KRAS	P01116	189 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	HOXB5	P09067	269 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	AKR1C2	P52895	323 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	HNF4G	Q14541	408 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	VKORC1L1	Q8N0U8	176 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	CADM3	Q8N126	398 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	R3HDM4	Q96D70	268 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	RITA1	Q96K30	269 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	SSX3	Q99909	188 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	COMMD9	Q9P000	198 aa		10.75	□□□□□ -0.69
ATF3-208	ENST00000465155	FAM90A9P	A6NNJ1	464 aa		10.74	□□□□□ -0.69
ATF3-208	ENST00000465155	SRRM4	A7MD48	611 aa	Known RBP	10.74	□□□□□ -0.69
ATF3-208	ENST00000465155	CCS	O14618	274 aa		10.74	□□□□□ -0.69
ATF3-208	ENST00000465155	GOSR2	O14653	212 aa		10.74	□□□□□ -0.69
ATF3-208	ENST00000465155	MOS	P00540	346 aa		10.74	□□□□□ -0.69
ATF3-208	ENST00000465155	HRAS	P01112	189 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 52 ms