RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 SLC38A6Q8IZM9 456 aa15.72■□□□□ 0.11
COL9A3-204ENST00000463487 MFSD4AQ8N468 514 aa15.72■□□□□ 0.11
COL9A3-204ENST00000463487 KLHDC1Q8N7A1 406 aa15.72■□□□□ 0.11
COL9A3-204ENST00000463487 OSR1Q8TAX0 266 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-204ENST00000463487 CD300LFQ8TDQ1 290 aa15.72■□□□□ 0.11
COL9A3-204ENST00000463487 DDB2Q92466 427 aa15.72■□□□□ 0.11
COL9A3-204ENST00000463487 TINAGL1Q9GZM7 467 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-204ENST00000463487 SIGLEC9Q9Y336 463 aa15.72■□□□□ 0.11
COL9A3-204ENST00000463487 ANKRD20A5PA0PJZ0 165 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 TNFSF12O43508 249 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 FCGR3BO75015 233 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 CRYZL1O95825 349 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 IGHG2P01859 326 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 VSIG10L2P0DP72 767 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 PGAM2P15259 253 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 GNRHRP30968 328 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 INPP1P49441 399 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 LINC00205P59089 165 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 ZNF45Q02386 682 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 SCGB2B2Q4G0G5 96 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 TMEM177Q53S58 311 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 AADACL3Q5VUY0 350 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 ZNF818PQ6ZRF7 136 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 LINC00299Q6ZSB3 139 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 DEDD2Q8WXF8 326 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 PRRT1Q99946 306 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 AIFM2Q9BRQ8 373 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 GON7Q9BXV9 100 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 FXYD6Q9H0Q3 95 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 SERTAD4Q9NUC0 356 aa15.71■□□□□ 0.11
COL9A3-204ENST00000463487 SH2D7A6NKC9 451 aaPredicted RBP15.7■□□□□ 0.1
COL9A3-204ENST00000463487 AP4M1O00189 453 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 HLA-DRB1P01911 266 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 CNTFRP26992 372 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 ZNF79Q15937 498 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 CNPY1Q3B7I2 92 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 VMA21Q3ZAQ7 101 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 OR2B11Q5JQS5 317 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 Q6ZS46 218 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 TOMM5Q8N4H5 51 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 GDPD1Q8N9F7 314 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 TERB2Q8NHR7 220 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 CHPT1Q8WUD6 406 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 RITA1Q96K30 269 aa15.7■□□□□ 0.1
COL9A3-204ENST00000463487 METTL1Q9UBP6 276 aaKnown RBP15.7■□□□□ 0.1
COL9A3-204ENST00000463487 CREBL2O60519 120 aaPredicted RBP15.69■□□□□ 0.1
COL9A3-204ENST00000463487 EIF4EBP1Q13541 118 aaPredicted RBP15.69■□□□□ 0.1
COL9A3-204ENST00000463487 PSG5Q15238 335 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 CENPVQ7Z7K6 275 aaPredicted RBP15.69■□□□□ 0.1
COL9A3-204ENST00000463487 OR4C16Q8NGL9 310 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 ZFAND1Q8TCF1 268 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 ZNF486Q96H40 463 aaPredicted RBP15.69■□□□□ 0.1
COL9A3-204ENST00000463487 RSRP1Q9BUV0 290 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 FBXL15Q9H469 300 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 PTTG2Q9NZH5 202 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 SCP2D1Q9UJQ7 156 aa15.69■□□□□ 0.1
COL9A3-204ENST00000463487 RBFOX2O43251 390 aaKnown RBP eCLIP15.68■□□□□ 0.14e-13■■■■□ 19.8
COL9A3-204ENST00000463487 SLC25A17O43808 307 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 RPL30P62888 115 aaKnown RBP15.68■□□□□ 0.1
COL9A3-204ENST00000463487 SLC35B1P78383 322 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 TRIQKQ629K1 86 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 LHFPL1Q86WI0 220 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 SPAG16Q8N0X2 631 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 TCTEX1D1Q8N7M0 179 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 OR4D10Q8NGI6 311 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 OR51H1Q8NH63 302 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 SRRQ9GZT4 340 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 WNT10AQ9GZT5 417 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 MCUBQ9NWR8 336 aa15.68■□□□□ 0.1
COL9A3-204ENST00000463487 HRASP01112 189 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 RLN1P04808 185 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 PPP5CP53041 499 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 TMEM95Q3KNT9 176 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 PHLDA2Q53GA4 152 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 VSTM2AQ8TAG5 236 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 TRIM63Q969Q1 353 aa15.67■□□□□ 0.1
COL9A3-204ENST00000463487 RBMXL1Q96E39 390 aaKnown RBP15.67■□□□□ 0.1
COL9A3-204ENST00000463487 PGLYRP1O75594 196 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-204ENST00000463487 VDAC1P21796 283 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 UBE2KP61086 200 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 SURF2Q15527 256 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-204ENST00000463487 ZNF57Q68EA5 555 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-204ENST00000463487 PPP1R27Q86WC6 154 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 CCDC71LQ8N9Z2 235 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 TEX45Q8NA69 505 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 OR4X2Q8NGF9 303 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 S100ZQ8WXG8 99 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 SCGB3A2Q96PL1 93 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 SLC2A8Q9NY64 477 aa15.66■□□□□ 0.1
COL9A3-204ENST00000463487 C14orf166Q9Y224 244 aaKnown RBP15.66■□□□□ 0.1
COL9A3-204ENST00000463487 PSMB11A5LHX3 300 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 HPRT1P00492 218 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 FAAP20Q6NZ36 180 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 ABHD5Q8WTS1 349 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 GPHA2Q96T91 129 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 CITED1Q99966 193 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 HSPB9Q9BQS6 159 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 OR51J1Q9H342 316 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 SLC2A9Q9NRM0 540 aa15.65■□□□□ 0.1
COL9A3-204ENST00000463487 FBXO24O75426 580 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms