RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 WNK2Q9Y3S1 2297 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 H7C2Y5 167 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 H2AFB1P0C5Y9 115 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 HFEQ30201 348 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 CT45A1Q5HYN5 189 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 TMEM88Q6PEY1 159 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 LYPD2Q6UXB3 125 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 CT45A3Q8NHU0 189 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 SFTA3P0C7M3 94 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 ATF4P18848 351 aaPredicted RBP11.29□□□□□ -0.6
CLK3-203ENST00000454830 REG1BP48304 166 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 LOXL3P58215 753 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 ZNF273Q14593 569 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 SSX8Q7RTT4 187 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 MUC15Q8N387 334 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 SAA2-SAA4A0A096LPE2 208 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 SAA2P0DJI9 122 aaPredicted RBP11.29□□□□□ -0.6
CLK3-203ENST00000454830 ARL16Q0P5N6 197 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 SVBPQ8N300 66 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 ST6GALNAC3Q8NDV1 305 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 QTRT1Q9BXR0 403 aaKnown RBP11.29□□□□□ -0.6
CLK3-203ENST00000454830 NKX6-2Q9C056 277 aaPredicted RBP11.29□□□□□ -0.6
CLK3-203ENST00000454830 IFI27L2Q9H2X8 130 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 C11orf1Q9H5F2 150 aa11.29□□□□□ -0.6
CLK3-203ENST00000454830 NUDT19A8MXV4 375 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 TMEM178BH3BS89 294 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 RAB29O14966 203 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 OPN1MWP04001 364 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 CD55P08174 381 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 OPN1MW2P0DN77 364 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 OPN1MW3P0DN78 364 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 RAB5CP51148 216 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 BRWD1-AS2P59051 145 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 GUK1Q16774 197 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 BTNL8Q6UX41 500 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 IGHV1-69-2A0A0G2JMI3 117 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 HPRT1P00492 218 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 HAGHQ16775 308 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 Q8TCH9 128 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 FAM222BQ8WU58 562 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 TNCP24821 2201 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 KALRNO60229 2985 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 F2RL2O00254 374 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 PROP1O75360 226 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 PRB3Q04118 309 aaPredicted RBP11.28□□□□□ -0.6
CLK3-203ENST00000454830 LCN15Q6UWW0 184 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 ODF3L1Q8IXM7 274 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 OR10P1Q8NGE3 313 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 OR4C12Q96R67 309 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 GAL3ST2Q9H3Q3 398 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 HCFC1P51610 2035 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 PKD1L2Q7Z442 2459 aa11.28□□□□□ -0.6
CLK3-203ENST00000454830 ZNF729A6NN14 1252 aaPredicted RBP11.27□□□□□ -0.6
CLK3-203ENST00000454830 OR9G9P0C7N8 305 aa11.27□□□□□ -0.6
CLK3-203ENST00000454830 OR13C7P0DN81 318 aa11.27□□□□□ -0.6
CLK3-203ENST00000454830 NQO2P16083 231 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 HOXA1P49639 335 aaPredicted RBP11.27□□□□□ -0.61
CLK3-203ENST00000454830 CDSNQ15517 529 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 AVPI1Q5T686 147 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 UNQ6494/PRO21346Q6UXR6 183 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 OR4S2Q8NH73 311 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 RHOVQ96L33 236 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 ZNF714Q96N38 554 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 PBDC1Q9BVG4 233 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 ARV1Q9H2C2 271 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 SMG1Q96Q15 3661 aaKnown RBP11.27□□□□□ -0.61
CLK3-203ENST00000454830 B9A039 149 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 UMAD1C9J7I0 102 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 M0R036 132 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 DVL1O14640 695 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 RAB2AP61019 212 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 PEA15Q15121 130 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 C1QTNF12Q5T7M4 302 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 OR10X1Q8NGY0 326 aa11.27□□□□□ -0.61
CLK3-203ENST00000454830 CACNA1AO00555 2505 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 BSNQ9UPA5 3926 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 LY6HO94772 140 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 DVL1P1P54792 670 aaPredicted RBP11.26□□□□□ -0.61
CLK3-203ENST00000454830 TAS2R30P59541 319 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 ZNF295-AS1Q8N0V1 137 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 PUSL1Q8N0Z8 303 aaKnown RBP11.26□□□□□ -0.61
CLK3-203ENST00000454830 TCTEX1D1Q8N7M0 179 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 ENY2Q9NPA8 101 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 IFNA4P05014 189 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 DMRTC2Q8IXT2 367 aaPredicted RBP11.26□□□□□ -0.61
CLK3-203ENST00000454830 C20orf24Q9BUV8 137 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 TMEM140Q9NV12 185 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 HSPB7Q9UBY9 170 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 TRAV3A0A0B4J244 114 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 FAM90A26D6RGX4 464 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 HMGB3O15347 200 aaKnown RBP11.26□□□□□ -0.61
CLK3-203ENST00000454830 ADCYAP1P18509 176 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 ZNF709Q8N972 641 aa11.26□□□□□ -0.61
CLK3-203ENST00000454830 TRIM77I1YAP6 450 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 AKR1C3P42330 323 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 ADORA2A-AS1P86434 159 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 TLE4Q04727 773 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 TEX36Q5VZQ5 186 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 ZNF525Q8N782 197 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 CIB3Q96Q77 187 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 300 ms