RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LIPKQ5VXJ0 399 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 ADAMTSL5Q6ZMM2 481 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 LAX1Q8IWV1 398 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 FAM3DQ96BQ1 224 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 OR2D2Q9H210 308 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 KCNK15Q9H427 330 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 SDHAF2Q9NX18 166 aa10.12□□□□□ -0.79
HMGB3-204ENST00000448905 AK6Q9Y3D8 172 aaKnown RBP10.12□□□□□ -0.79
HMGB3-204ENST00000448905 IGKV1-6A0A0C4DH72 117 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 FAM223BA6NKX1 122 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 IGLV2-23P01705 113 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 HSMCR30P0CW71 290 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 SNRPBP14678 240 aaKnown RBP10.11□□□□□ -0.79
HMGB3-204ENST00000448905 GADD45AP24522 165 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 TALDO1P37837 337 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 TNXAQ16473 311 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 SLC25A42Q86VD7 318 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 FAM223AQ8IWN6 122 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 KCTD12Q96CX2 325 aaKnown RBP10.11□□□□□ -0.79
HMGB3-204ENST00000448905 RAB3CQ96E17 227 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 SPIN2AQ99865 258 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 SPIN2BQ9BPZ2 258 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 GINS4Q9BRT9 223 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 TPRKBQ9Y3C4 175 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 CEPT1Q9Y6K0 416 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 DNAH7Q8WXX0 4024 aa10.11□□□□□ -0.79
HMGB3-204ENST00000448905 TRBV6-7A0A0A0MS04 114 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 FOXI3A8MTJ6 420 aaPredicted RBP10.1□□□□□ -0.79
HMGB3-204ENST00000448905 UBE2KP61086 200 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 DYRK1AQ13627 763 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 RCN1Q15293 331 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 PRSS8Q16651 343 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 IGSF11Q5DX21 431 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 ADAD2Q8NCV1 583 aaKnown RBP10.1□□□□□ -0.79
HMGB3-204ENST00000448905 OSR1Q8TAX0 266 aaPredicted RBP10.1□□□□□ -0.79
HMGB3-204ENST00000448905 DYNLRB2Q8TF09 96 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 ACOT12Q8WYK0 555 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 NEURL2Q9BR09 285 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 DCUN1D5Q9BTE7 237 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 ACOT13Q9NPJ3 140 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 V9GY05 133 aa10.1□□□□□ -0.79
HMGB3-204ENST00000448905 METTL21EPA6NDL7 271 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 SRRM4A7MD48 611 aaKnown RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 PDCD5O14737 125 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 GSTT2P0CG29 244 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 GSTT2BP0CG30 244 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 APELAP0DMC3 54 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 CALRP27797 417 aaKnown RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 MAP2K4P45985 399 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 MECP2P51608 486 aaKnown RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 CD81P60033 236 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 SSBP2P81877 361 aaPredicted RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 RHOGP84095 191 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 ARL6IP1Q15041 203 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 PLAC9Q5JTB6 97 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 NECAP1Q8NC96 275 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 THAP7Q9BT49 309 aaPredicted RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 HIPK2Q9H2X6 1198 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 TECRQ9NZ01 308 aaKnown RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 LSM2Q9Y333 95 aaKnown RBP10.09□□□□□ -0.79
HMGB3-204ENST00000448905 PRELID3BQ9Y3B1 194 aa10.09□□□□□ -0.79
HMGB3-204ENST00000448905 SLC22A5O76082 557 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 CRYZL1O95825 349 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 TRBV12-3P01733 135 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 FCGR3AP08637 254 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 CLDN12P56749 244 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 ARFRP1Q13795 201 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 GUCA2BQ16661 112 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 CD300EQ496F6 205 aaPredicted RBP10.08□□□□□ -0.8
HMGB3-204ENST00000448905 OGFRL1Q5TC84 451 aaPredicted RBP10.08□□□□□ -0.8
HMGB3-204ENST00000448905 TMEM91Q6ZNR0 172 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 MMD2Q8IY49 270 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 TTC9CQ8N5M4 171 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 OR10R2Q8NGX6 335 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 SRSF12Q8WXF0 261 aaKnown RBP10.08□□□□□ -0.8
HMGB3-204ENST00000448905 CABLES2Q9BTV7 478 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 AKIP1Q9NQ31 210 aa10.08□□□□□ -0.8
HMGB3-204ENST00000448905 STARD9Q9P2P6 4700 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.07□□□□□ -0.8
HMGB3-204ENST00000448905 TRBV9A0A0B4J1U6 114 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 DPPA5A6NC42 116 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 IZUMO1RA6ND01 250 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 OR11H12B2RN74 326 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 GGCTO75223 188 aaKnown RBP10.07□□□□□ -0.8
HMGB3-204ENST00000448905 CTXN2P0C2S0 81 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 DUTP33316 252 aaKnown RBP10.07□□□□□ -0.8
HMGB3-204ENST00000448905 EXOSC2Q13868 293 aaKnown RBP10.07□□□□□ -0.8
HMGB3-204ENST00000448905 SSX1Q16384 188 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 DEFB114Q30KQ6 69 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 LINC00322Q6ZN03 302 aaPredicted RBP10.07□□□□□ -0.8
HMGB3-204ENST00000448905 SLC16A13Q7RTY0 426 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 GFI1Q99684 422 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 CCDC90BQ9GZT6 254 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 PLEKHA3Q9HB20 300 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 ZNF230Q9UIE0 474 aaPredicted RBP10.07□□□□□ -0.8
HMGB3-204ENST00000448905 ADAM30Q9UKF2 790 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 SORL1Q92673 2214 aa10.07□□□□□ -0.8
HMGB3-204ENST00000448905 LYSTQ99698 3801 aa10.06□□□□□ -0.8
HMGB3-204ENST00000448905 HYDINQ4G0P3 5121 aa10.06□□□□□ -0.8
HMGB3-204ENST00000448905 A0A075B6Q4 140 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms