RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CDX2Q99626 313 aaPredicted RBP3.05□□□□□ -1.92
VPS29-202ENST00000447578 SLC25A21Q9BQT8 299 aaPredicted RBP3.05□□□□□ -1.92
VPS29-202ENST00000447578 UQCC2Q9BRT2 126 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 FXYD6Q9H0Q3 95 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 PRO3102Q9H379 93 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 ZNF702PQ9H963 129 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 GPR84Q9NQS5 396 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 GLTPQ9NZD2 209 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 OPN4Q9UHM6 478 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 CYB5R1Q9UHQ9 305 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 DKKL1Q9UK85 242 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 NXT1Q9UKK6 140 aaKnown RBP3.05□□□□□ -1.92
VPS29-202ENST00000447578 VSIG4Q9Y279 399 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 NOP16Q9Y3C1 178 aaKnown RBP3.05□□□□□ -1.92
VPS29-202ENST00000447578 HDGFL3Q9Y3E1 203 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 LHFPL6Q9Y693 200 aa3.05□□□□□ -1.92
VPS29-202ENST00000447578 CHCHD2Q9Y6H1 151 aaPredicted RBP3.05□□□□□ -1.92
VPS29-202ENST00000447578 KIAA0100Q14667 2235 aaKnown RBP3.05□□□□□ -1.92
VPS29-202ENST00000447578 CENPFP49454 3210 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 DNAH12Q6ZR08 3092 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 ADAMTS9Q9P2N4 1935 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 TRAV14DV4A0A0A6YYC5 116 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 TRBV9A0A0B4J1U6 114 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 A0A1B0GTI1 187 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 C5orf63A6NC05 138 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 RFPL4AA6NLU0 287 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 HMSDA8MTL9 139 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 SERPINE3A8MV23 424 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 TMEM14DPA8MWL7 114 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 D6RAR5 112 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 F5H5K5 113 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 RFPL4AL1F8VTS6 287 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 I3L521 148 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 TNFSF11O14788 317 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 AGPAT2O15120 278 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 RP2O75695 350 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 SERF1AO75920 110 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 CRYZL1O95825 349 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 IGHV3-48P01763 117 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 HLA-AP01891 365 aaKnown RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 PMP2P02689 132 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 IFNA6P05013 189 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 SERPINA5P05154 406 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 STAG3L2P0CL84 134 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 CCL3P10147 92 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 COX6A1P12074 109 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 NR2C1P13056 603 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 FKBP2P26885 142 aaKnown RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 HOXA6P31267 233 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 S100A11P31949 105 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 GUCA1AP43080 201 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 SSR4P51571 173 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 AP2S1P53680 142 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 DSCR4P56555 118 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 GRB2P62993 217 aaKnown RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 QRFPP83859 136 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 UNC119Q13432 240 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 MPPED2Q15777 294 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 LCE1CQ5T751 118 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 LCE1BQ5T7P3 118 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 GPR157Q5UAW9 335 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 ZNF774Q6NX45 483 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 OR2W3Q7Z3T1 314 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 NAA40Q86UY6 237 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 RPS19BP1Q86WX3 136 aaKnown RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 OR5AS1Q8N127 324 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 LRRC18Q8N456 261 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 TMEM156Q8N614 296 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 ZDHHC22Q8N966 263 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 OR10R2Q8NGX6 335 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 OR5B3Q8NH48 314 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 COQ8AQ8NI60 647 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 TMEM54Q969K7 222 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 IMMP1LQ96LU5 166 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 SPACA5Q96QH8 159 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 GPER1Q99527 375 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 PRRT1Q99946 306 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 NICN1Q9BSH3 213 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 PAXXQ9BUH6 204 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 PDCD10Q9BUL8 212 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 ANGPTL4Q9BY76 406 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 ARL6Q9H0F7 186 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 ALX4Q9H161 411 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 LPAR5Q9H1C0 372 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 BANF2Q9H503 90 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 WDR54Q9H977 334 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 SLC39A1Q9NY26 324 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 CALYQ9NYX4 217 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 COMMD9Q9P000 198 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 ZNF230Q9UIE0 474 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 ZNF107Q9UII5 783 aaPredicted RBP3.04□□□□□ -1.92
VPS29-202ENST00000447578 GOLT1BQ9Y3E0 138 aa3.04□□□□□ -1.92
VPS29-202ENST00000447578 BRCA2P51587 3418 aa3.03□□□□□ -1.92
VPS29-202ENST00000447578 NUP210LQ5VU65 1888 aa3.03□□□□□ -1.92
VPS29-202ENST00000447578 IGKV1-9A0A0C4DH69 117 aa3.03□□□□□ -1.92
VPS29-202ENST00000447578 KIR2DL5BA0A0G2JN68 375 aa3.03□□□□□ -1.92
VPS29-202ENST00000447578 KIR2DL5BA0A0G2JPC4 375 aa3.03□□□□□ -1.92
VPS29-202ENST00000447578 LOC102725191A0A1B0GVB3 256 aa3.03□□□□□ -1.92
VPS29-202ENST00000447578 C9orf170A2RU37 121 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 178.3 ms