RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NBEAL2Q6ZNJ1 2754 aa9.77□□□□□ -0.84
PTPRF-208ENST00000437607 NOTCH3Q9UM47 2321 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 hCG_2014768A0A024R1R8 64 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 ODF3BA8MYP8 253 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 IL5P05113 134 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 VSIG10L2P0DP72 767 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 CEACAM3P40198 252 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF134P52741 427 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 LGALS4P56470 323 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 DHRS2Q13268 280 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 PPP1R1AQ13522 171 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 RPL39P5Q59GN2 51 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 GLDNQ6ZMI3 551 aaPredicted RBP9.77□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF66Q6ZN08 573 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 Q6ZNX1 250 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 LYG2Q86SG7 212 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 TBC1D26Q86UD7 250 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 OR11H6Q8NGC7 330 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 OR4P4Q8NGL7 312 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 CASTOR1Q8WTX7 329 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 RPEQ96AT9 228 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 C5orf30Q96GV9 206 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 HSD17B10Q99714 261 aaKnown RBP9.77□□□□□ -0.85
PTPRF-208ENST00000437607 ALX4Q9H161 411 aaPredicted RBP9.77□□□□□ -0.85
PTPRF-208ENST00000437607 ALG5Q9Y673 324 aa9.77□□□□□ -0.85
PTPRF-208ENST00000437607 A0A0B4J293 547 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 C7orf66A4D0T2 115 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 H0Y980 276 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 RNASEK-C17orf49H0YIS7 233 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 MPPED1O15442 326 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 TXNL1O43396 289 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 B3GALNT1O75752 331 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 TSPAN9O75954 239 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 IGLV1-47P01700 117 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 THBS3P49746 956 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF137PP52743 207 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 SRPXP78539 464 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 HIST2H2BDQ6DRA6 164 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 TGIF2LXQ8IUE1 241 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 COQ8AQ8NI60 647 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF431Q8TF32 576 aaPredicted RBP9.76□□□□□ -0.85
PTPRF-208ENST00000437607 ADTRPQ96IZ2 230 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 VPREB3Q9UKI3 123 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 KCNIP3Q9Y2W7 256 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 PRELID3BQ9Y3B1 194 aa9.76□□□□□ -0.85
PTPRF-208ENST00000437607 C3orf85A0A1B0GTC6 90 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 A0A1W2PRD5 423 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 A0A1W2PRF3 423 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 A0A1W2PRM7 423 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 C9orf170A2RU37 121 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 SNRPGP15A8MWD9 76 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 G3V4G9 280 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 SSNA1O43805 119 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 PGLYRP1O75594 196 aaPredicted RBP9.75□□□□□ -0.85
PTPRF-208ENST00000437607 SFT2D2O95562 160 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 IGLV2-14P01704 120 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 APOA2P02652 100 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 OR5AC1P0C628 307 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 F2RP25116 425 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 HTR1DP28221 377 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 KIR2DS2P43631 304 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 REG1BP48304 166 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 UBE2E1P51965 193 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 BEAN1Q3B7T3 259 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 MINOS1Q5TGZ0 78 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 DHRS7BQ6IAN0 325 aaPredicted RBP9.75□□□□□ -0.85
PTPRF-208ENST00000437607 HCP5Q6MZN7 132 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF833PQ6ZTB9 187 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 ODF3L1Q8IXM7 274 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 OR52B4Q8NGK2 314 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 GALNT14Q96FL9 552 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 PHB2Q99623 299 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 MRPL20Q9BYC9 149 aaKnown RBP9.75□□□□□ -0.85
PTPRF-208ENST00000437607 OR51J1Q9H342 316 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 GAB2Q9UQC2 676 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 TBL2Q9Y4P3 447 aaKnown RBP9.75□□□□□ -0.85
PTPRF-208ENST00000437607 MINOS1-NBL1R4GNA1 71 aa9.75□□□□□ -0.85
PTPRF-208ENST00000437607 PIGBOS1A0A0B4J2F0 54 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 VGLL3A8MV65 326 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 LEUTXA8MZ59 168 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 BUB1B-PAK6H3BSN5 160 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 NPFFO15130 113 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 DUS4LO95620 317 aaKnown RBP9.74□□□□□ -0.85
PTPRF-208ENST00000437607 SERPINE2P07093 398 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 FBP1P09467 338 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 DUTP33316 252 aaKnown RBP9.74□□□□□ -0.85
PTPRF-208ENST00000437607 ARHGDIBP52566 201 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 DHODHQ02127 395 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 RTL8BQ17RB0 113 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 C2orf68Q2NKX9 166 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 FBLN7Q53RD9 439 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 OR2B11Q5JQS5 317 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 TPTE2P1Q5T6R2 138 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 CCDC144NLQ6NUI1 221 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 TCTEX1D1Q8N7M0 179 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 GPHA2Q96T91 129 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 DPM3Q9P2X0 92 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 FAM96BQ9Y3D0 163 aa9.74□□□□□ -0.85
PTPRF-208ENST00000437607 GAPDHP04406 335 aaKnown RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 SAA4P35542 130 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms