RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ZNF66Q6ZN08 573 aa9.84□□□□□ -0.83
CD44-209ENST00000433892 LRRC29Q8WV35 223 aa9.84□□□□□ -0.83
CD44-209ENST00000433892 SNX22Q96L94 193 aa9.84□□□□□ -0.83
CD44-209ENST00000433892 HSD17B10Q99714 261 aaKnown RBP9.84□□□□□ -0.83
CD44-209ENST00000433892 QTRT1Q9BXR0 403 aaKnown RBP9.84□□□□□ -0.83
CD44-209ENST00000433892 ACTR3CQ9C0K3 210 aaPredicted RBP9.84□□□□□ -0.83
CD44-209ENST00000433892 PARLQ9H300 379 aa9.84□□□□□ -0.83
CD44-209ENST00000433892 HEATR1Q9H583 2144 aaKnown RBP9.84□□□□□ -0.83
CD44-209ENST00000433892 C15orf65H3BRN8 121 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 PHOX2AO14813 284 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 PRDX2P32119 198 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 RPL23P62829 140 aaKnown RBP9.83□□□□□ -0.84
CD44-209ENST00000433892 RTP5Q14D33 572 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 SSX9Q7RTT3 188 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 OR2Z1Q8NG97 314 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 R3HDM4Q96D70 268 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 FAM234AQ9H0X4 552 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 LAMP3Q9UQV4 416 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 INTS1Q8N201 2190 aaKnown RBP9.83□□□□□ -0.84
CD44-209ENST00000433892 CACNA1HO95180 2353 aa9.83□□□□□ -0.84
CD44-209ENST00000433892 IGHV2OR16-5A0A0B4J2B6 119 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 IGHV1-18A0A0C4DH31 117 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 TMEM250H0YL14 139 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 PAGE4O60829 102 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 FCGR3BO75015 233 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 PROP1O75360 226 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 OR9G9P0C7N8 305 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 FABP4P15090 132 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 CLEC12BQ2HXU8 276 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 TCTEX1D1Q8N7M0 179 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 OR10A7Q8NGE5 316 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 OPN3Q9H1Y3 402 aaPredicted RBP9.82□□□□□ -0.84
CD44-209ENST00000433892 CACNA1GO43497 2377 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 C15orf62A8K5M9 175 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 ZNF891A8MT65 544 aaPredicted RBP9.82□□□□□ -0.84
CD44-209ENST00000433892 EGR1P18146 543 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 TUBG1P23258 451 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 GPR12P47775 334 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 GNB2P62879 340 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 VWC2Q2TAL6 325 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 GCSAMLQ5JQS6 135 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 VKORC1L1Q8N0U8 176 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 ZNF383Q8NA42 475 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 C1orf162Q8NEQ5 155 aaPredicted RBP9.82□□□□□ -0.84
CD44-209ENST00000433892 MANBALQ9NQG1 85 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 GNG12Q9UBI6 72 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 DUSP13Q9UII6 198 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 WASF3Q9UPY6 502 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 GAB2Q9UQC2 676 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 DMRT1Q9Y5R6 373 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 CADP27708 2225 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 MGAQ8IWI9 3026 aa9.82□□□□□ -0.84
CD44-209ENST00000433892 ELOA3CA0A087WX78 387 aaPredicted RBP9.81□□□□□ -0.84
CD44-209ENST00000433892 AQP7O14520 342 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 PFN1P07737 140 aaKnown RBP9.81□□□□□ -0.84
CD44-209ENST00000433892 ADH4P08319 380 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 BMP5P22003 454 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 DUTP33316 252 aaKnown RBP9.81□□□□□ -0.84
CD44-209ENST00000433892 HTD2P86397 168 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 ELOVL1Q9BW60 279 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 IGKV1D-17A0A075B6S4 117 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 IGHV3OR15-7A0A075B7D8 119 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 PRR33A8MZF0 331 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 C17orf112F2Z3M2 114 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 H7BYZ3 331 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 TGOLN2O43493 480 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 IGLV1-44P01699 117 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 WT1P19544 449 aaPredicted RBP9.81□□□□□ -0.84
CD44-209ENST00000433892 GZMHP20718 246 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 GALR1P47211 349 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 C9orf152Q5JTZ5 239 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 LRP11Q86VZ4 500 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 Q8N7P7 452 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 OR4X1Q8NH49 305 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 OR6C3Q9NZP0 311 aa9.81□□□□□ -0.84
CD44-209ENST00000433892 RP1L1Q8IWN7 2480 aaPredicted RBP9.8□□□□□ -0.84
CD44-209ENST00000433892 TTC28Q96AY4 2481 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 TRAV38-1A0A0B4J264 116 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 SMCO3A2RU48 225 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 CD1BP29016 333 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 CDC34P49427 236 aaPredicted RBP9.8□□□□□ -0.84
CD44-209ENST00000433892 MSMPQ1L6U9 139 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 RPL39P5Q59GN2 51 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 PRAMEF5Q5TYX0 476 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 MBNL2Q5VZF2 373 aaKnown RBP9.8□□□□□ -0.84
CD44-209ENST00000433892 OR5T1Q8NG75 326 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 OR51G1Q8NGK1 321 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 SARAFQ96BY9 339 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 SRD5A3Q9H8P0 318 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 PLSCR4Q9NRQ2 329 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 PTPRBP23467 1997 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 C11orf94C9JXX5 98 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 M0R1X1 148 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 TNFSF13O75888 250 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 IFNA10P01566 189 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 CRYAAP02489 173 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 NPPCP23582 126 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 ZNF134P52741 427 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 EDDM3BP56851 147 aa9.8□□□□□ -0.84
CD44-209ENST00000433892 ACOT6Q3I5F7 207 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms