RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 ZNF708P17019 499 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 MAS1LP35410 378 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 TAS2R60P59551 318 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 ROM1Q03395 351 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 TMEM45BQ96B21 275 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 C14orf144Q96I85 54 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 C1RLQ9NZP8 487 aa12.46□□□□□ -0.42
PTPRU-204ENST00000428026 FAM27BQ5VT28 67 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 ZNF826PQ6ZT77 177 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 MMD2Q8IY49 270 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 MIEN1Q9BRT3 115 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 GLRX2Q9NS18 164 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 SBF1O95248 1867 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 TMEM238LA0A1B0GVL6 79 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 A0A1W2PR77 199 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 A6NJY4 79 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 SNAI3Q3KNW1 292 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 C2orf83Q53S99 150 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 GMPPAQ96IJ6 420 aaPredicted RBP12.45□□□□□ -0.42
PTPRU-204ENST00000428026 WDR54Q9H977 334 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 FAM186AA6NE01 2351 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 A0A1W2PQM1 296 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 ZP4Q12836 540 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 RSPO4Q2I0M5 234 aaPredicted RBP12.45□□□□□ -0.42
PTPRU-204ENST00000428026 ZNF506Q5JVG8 444 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 BIVMQ86UB2 503 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 CALHM1Q8IU99 346 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 CKAP5Q14008 2032 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 C7orf71A4D174 169 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 TMEM210A6NLX4 147 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 GDF9O60383 454 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 EFNB1P98172 346 aa12.45□□□□□ -0.42
PTPRU-204ENST00000428026 ABCA7Q8IZY2 2146 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 SNAI2O43623 268 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 HLA-DRB1P01911 266 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 RPS11P62280 158 aaKnown RBP eCLIP12.44□□□□□ -0.42
PTPRU-204ENST00000428026 RNFT1Q5M7Z0 435 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 UNQ9370/PRO34162Q6UXP9 181 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 ERASQ7Z444 233 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 ZNF645Q8N7E2 425 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 ST6GALNAC6Q969X2 333 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 KLK15Q9H2R5 256 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 RPL31P62899 125 aaKnown RBP12.44□□□□□ -0.42
PTPRU-204ENST00000428026 SFRP2Q96HF1 295 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 MPDU1O75352 247 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 EMP1P54849 157 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 AUP1Q9Y679 476 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 TDRD6O60522 2096 aaKnown RBP12.44□□□□□ -0.42
PTPRU-204ENST00000428026 ISG15P05161 165 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 TMEM187Q14656 261 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 ZNF818PQ6ZRF7 136 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 NFAM1Q8NET5 270 aaPredicted RBP12.44□□□□□ -0.42
PTPRU-204ENST00000428026 CCL13Q99616 98 aa12.44□□□□□ -0.42
PTPRU-204ENST00000428026 TSPAN2O60636 221 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 CELA2AP08217 269 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 FBXW9Q5XUX1 488 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 C19orf48Q6RUI8 117 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 KCNK17Q96T54 332 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 SLC25A10Q9UBX3 287 aaPredicted RBP12.43□□□□□ -0.42
PTPRU-204ENST00000428026 SPTBP11277 2137 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 C4orf51C9J302 202 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 IMMP2LQ96T52 175 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 A8MXK9 166 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 SRSF12Q8WXF0 261 aaKnown RBP12.43□□□□□ -0.42
PTPRU-204ENST00000428026 FAM206AQ9NX38 181 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 LHFPL6Q9Y693 200 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 ATXN7O15265 892 aaPredicted RBP12.43□□□□□ -0.42
PTPRU-204ENST00000428026 TNFRSF9Q07011 255 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 TTC32Q5I0X7 151 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 MRPL13Q9BYD1 178 aaKnown RBP12.43□□□□□ -0.42
PTPRU-204ENST00000428026 MYO16Q9Y6X6 1858 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 K7N7A8 449 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 CD8AP01732 235 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 TMEM136Q6ZRR5 245 aa12.43□□□□□ -0.42
PTPRU-204ENST00000428026 OTOFQ9HC10 1997 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 LOC101059948A0A1B0GTJ6 334 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 NPBWR2P48146 333 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 FOXA3P55318 350 aaPredicted RBP12.42□□□□□ -0.42
PTPRU-204ENST00000428026 VKORC1L1Q8N0U8 176 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 TXNDC17Q9BRA2 123 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 NUDT3O95989 172 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 IGHV3-48P01763 117 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 RND2P52198 227 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 CCL8P80075 99 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 HEXA-AS1Q9H8Q6 139 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 CARHSP1Q9Y2V2 147 aaKnown RBP12.42□□□□□ -0.42
PTPRU-204ENST00000428026 DPRXA6NFQ7 191 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 S1PR2O95136 353 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 PRSS2P07478 247 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 ABHD12Q8N2K0 398 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 G6PC2Q9NQR9 355 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 RPL27AP46776 148 aaKnown RBP12.42□□□□□ -0.42
PTPRU-204ENST00000428026 TMPRSS3P57727 454 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 HERPUD1Q15011 391 aa12.42□□□□□ -0.42
PTPRU-204ENST00000428026 COX6CP09669 75 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 LEAP2Q969E1 77 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 SCNM1Q9BWG6 230 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 IGKV3D-15A0A087WSY6 115 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 IGKV3-15P01624 115 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 ARF6P62330 175 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms