RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 H2BFWTQ7Z2G1 175 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 PDPNQ86YL7 162 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 FOXRED2Q8IWF2 684 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 LRRC75A-AS1Q8N1F1 130 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 ABHD12Q8N2K0 398 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 DMBX1Q8NFW5 382 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 CT45A3Q8NHU0 189 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 RPEQ96AT9 228 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 R3HDM4Q96D70 268 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 SEC22AQ96IW7 307 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 OR10C1Q96KK4 312 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 HARBI1Q96MB7 349 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 CLCC1Q96S66 551 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 AIFM2Q9BRQ8 373 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 PCGF1Q9BSM1 259 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 MRPL20Q9BYC9 149 aaKnown RBP4.87□□□□□ -1.63
HMGB3-202ENST00000419110 HEXA-AS1Q9H8Q6 139 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 PLEKHA2Q9HB19 425 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 ZC4H2Q9NQZ6 224 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 SIRT7Q9NRC8 400 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 COA4Q9NYJ1 87 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 CACNG5Q9UF02 275 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 CACFD1Q9UGQ2 172 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 WASHC3Q9Y3C0 194 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 MMP24Q9Y5R2 645 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 POMT1Q9Y6A1 747 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 ABCA12Q86UK0 2595 aa4.87□□□□□ -1.63
HMGB3-202ENST00000419110 NAV2Q8IVL1 2488 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 IGHV4-30-2A0A087WSY4 118 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 IGHV4-61A0A0C4DH41 118 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 FAM90A9PA6NNJ1 464 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 MPTX1A8MV57 137 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 VWC2LB2RUY7 222 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 FAM90A26D6RGX4 464 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 E5RGE8 158 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 K7EPK0 472 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 BCL2L11O43521 198 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 SSSCA1O60232 199 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 GPR137BO60478 399 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 RAMP3O60896 148 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 TSC22D2O75157 780 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 MED6O75586 246 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 DEDDO75618 318 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 OR2F2O95006 317 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 IGKV1-5P01602 117 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 ARG1P05089 322 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 H2AFB1P0C5Y9 115 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 PRTN3P24158 256 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 G6PCP35575 357 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 DVL1P1P54792 670 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 ARF6P62330 175 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 UBA52P62987 128 aaKnown RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 OR2F1Q13607 317 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 DEFB113Q30KQ7 82 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 Q5PR19 223 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 CCDC144NLQ6NUI1 221 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 VMO1Q7Z5L0 202 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 ZNF546Q86UE3 836 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 STX12Q86Y82 276 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 ODF3L1Q8IXM7 274 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 PNKDQ8N490 385 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 FAM71E2Q8N5Q1 922 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 DRAXINQ8NBI3 349 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 OR4D5Q8NGN0 318 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 VSTM2AQ8TAG5 236 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 OSR1Q8TAX0 266 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 DDB2Q92466 427 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 NRGNQ92686 78 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 WDR89Q96FK6 387 aaPredicted RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 ZNF251Q9BRH9 671 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 MFFQ9GZY8 342 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 UNKLQ9H9P5 680 aaKnown RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 TMEM140Q9NV12 185 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 NUP50Q9UKX7 468 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 TNFSF18Q9UNG2 199 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 RCL1Q9Y2P8 373 aaKnown RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 NSG2Q9Y328 171 aa4.86□□□□□ -1.63
HMGB3-202ENST00000419110 PRRC2AP48634 2157 aaKnown RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 UTP20O75691 2785 aaKnown RBP4.86□□□□□ -1.63
HMGB3-202ENST00000419110 NAV3Q8IVL0 2385 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 TRAV20A0A0B4J274 112 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 A0A0D9SG52 128 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 ODF3BA8MYP8 253 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 LEUTXA8MZ59 168 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 OOSP1A8MZH6 123 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 H0YJW9 148 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 SHOXO15266 292 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 TOX4O94842 621 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 SCAF4O95104 1147 aaKnown RBP4.85□□□□□ -1.63
HMGB3-202ENST00000419110 SPDEFO95238 335 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 LY86O95711 162 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 KRASP01116 189 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 IGKV1-39P01597 117 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 IGLV1-47P01700 117 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 MBPP02686 304 aaPredicted RBP4.85□□□□□ -1.63
HMGB3-202ENST00000419110 IGKV1D-39P04432 117 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 MSMBP08118 114 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 LYL1P12980 280 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 MMP9P14780 707 aa4.85□□□□□ -1.63
HMGB3-202ENST00000419110 USF1P22415 310 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms