RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ACSM6Q6P461 480 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 FGFBP3Q8TAT2 258 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 NUDT16L1Q9BRJ7 211 aaKnown RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 TP73-AS1Q9UF72 201 aa10.98□□□□□ -0.65
PTPRN-202ENST00000409251 INTS1Q8N201 2190 aaKnown RBP10.98□□□□□ -0.65
PTPRN-202ENST00000409251 F2RP25116 425 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 MAJINQ3KP22 176 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 LCN12Q6JVE5 192 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 Q6ZWC4 215 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 FADS6Q8N9I5 356 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF114Q8NC26 417 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 SSMEM1Q8WWF3 244 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 TM2D1Q9BX74 207 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 TMEM106BQ9NUM4 274 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 CREBBPQ92793 2442 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 DEFB108AA8MXU0 73 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 DKK1O94907 266 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 IGHEP01854 428 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 RBM11P57052 281 aaKnown RBP10.97□□□□□ -0.65
PTPRN-202ENST00000409251 PLA2G2CQ5R387 149 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF573Q86YE8 665 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 TUSC5Q8IXB3 177 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ODF3L1Q8IXM7 274 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ANAPC10Q9UM13 185 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ADAMTS20P59510 1910 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 NEURL1O76050 574 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ID3Q02535 119 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 Q6ZPA2 131 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 MKXQ8IYA7 352 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF525Q8N782 197 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 C22orf15Q8WYQ4 148 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 R3HDM4Q96D70 268 aa10.97□□□□□ -0.65
PTPRN-202ENST00000409251 RRP8O43159 456 aaKnown RBP10.96□□□□□ -0.65
PTPRN-202ENST00000409251 IGHMP01871 453 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 WT1P19544 449 aaPredicted RBP10.96□□□□□ -0.65
PTPRN-202ENST00000409251 CA6P23280 308 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 RAC1P63000 192 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 HOXA4Q00056 320 aaPredicted RBP10.96□□□□□ -0.65
PTPRN-202ENST00000409251 DEFB109BQ30KR1 87 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 MRPL21Q7Z2W9 205 aaKnown RBP10.96□□□□□ -0.65
PTPRN-202ENST00000409251 STPG4Q8N801 248 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 RFESDQ8TAC1 157 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 ZC2HC1AQ96GY0 325 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 TECTBQ96PL2 329 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF703Q9H7S9 590 aaPredicted RBP10.96□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF586Q9NXT0 402 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 CLCF1Q9UBD9 225 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 SYNGR1O43759 233 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF439Q8NDP4 499 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 ZNF596Q8TC21 504 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 SPSB1Q96BD6 273 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 MIEN1Q9BRT3 115 aa10.96□□□□□ -0.65
PTPRN-202ENST00000409251 CPAMD8Q8IZJ3 1885 aa10.96□□□□□ -0.66
PTPRN-202ENST00000409251 C5orf49A4QMS7 147 aa10.96□□□□□ -0.66
PTPRN-202ENST00000409251 Q56UQ5 140 aa10.96□□□□□ -0.66
PTPRN-202ENST00000409251 CRIP3Q6Q6R5 217 aa10.96□□□□□ -0.66
PTPRN-202ENST00000409251 NUFIP2Q7Z417 695 aaKnown RBP10.96□□□□□ -0.66
PTPRN-202ENST00000409251 OR2M7Q8NG81 312 aa10.96□□□□□ -0.66
PTPRN-202ENST00000409251 NCKAP5O14513 1909 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 KIAA1549Q9HCM3 1950 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 IGHV3-43A0A0B4J1X8 118 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 IGHV3-43DP0DP04 118 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 MRPS11P82912 194 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 RSPO1Q2MKA7 263 aaPredicted RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 LHFPL2Q6ZUX7 228 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 CXorf67Q86X51 503 aaPredicted RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 OR1F12Q8NHA8 337 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 OR5P3Q8WZ94 311 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 PINX1Q96BK5 328 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 SLC35E1Q96K37 410 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 RAB40CQ96S21 281 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 MRPL18Q9H0U6 180 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 ATP23Q9Y6H3 246 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 A0A1B0GW64 132 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 ZNF253O75346 499 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 ZIC4Q8N9L1 334 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 NHLRC2Q8NBF2 726 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 OR10P1Q8NGE3 313 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 RNASEH2CQ8TDP1 164 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 UHRF2Q96PU4 802 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 ABCA4P78363 2273 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 M0QZK8 103 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 GGCTO75223 188 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 MRPL33O75394 65 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 COX5AP20674 150 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 MEOX1P50221 254 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 ZP4Q12836 540 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 OR8I2Q8N0Y5 310 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 FAM58AQ8N1B3 248 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 TMEM251Q8N6I4 163 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 TTTY12Q9BZ98 90 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 WDR61Q9GZS3 305 aaKnown RBP10.95□□□□□ -0.66
PTPRN-202ENST00000409251 MTCH1Q9NZJ7 389 aa10.95□□□□□ -0.66
PTPRN-202ENST00000409251 CDC34P49427 236 aaPredicted RBP10.94□□□□□ -0.66
PTPRN-202ENST00000409251 PDLIM3Q53GG5 364 aaPredicted RBP10.94□□□□□ -0.66
PTPRN-202ENST00000409251 NMSQ5H8A3 153 aa10.94□□□□□ -0.66
PTPRN-202ENST00000409251 LEMD1Q68G75 181 aa10.94□□□□□ -0.66
PTPRN-202ENST00000409251 C20orf204Q6ZNR8 217 aa10.94□□□□□ -0.66
PTPRN-202ENST00000409251 TPRX1Q8N7U7 411 aa10.94□□□□□ -0.66
PTPRN-202ENST00000409251 SH3BGRL2Q9UJC5 107 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms