RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 ZNF675Q8TD23 568 aa0.47□□□□□ -2.33
RNU4-28P-201ENST00000364739 OR7D2Q96RA2 312 aa0.47□□□□□ -2.33
RNU4-28P-201ENST00000364739 FLT4P35916 1363 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 ALPK2Q86TB3 2170 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 A0A0D9SEW6 157 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 CA5AP35218 305 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 DLX6P56179 175 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 TPI1P60174 286 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 DAD1P61803 113 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 RPS19BP1Q86WX3 136 aaKnown RBP0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 OR13C8Q8NGS7 320 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 SLC7A6Q92536 515 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 RORBQ92753 470 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 TIMM9Q9Y5J7 89 aa0.46□□□□□ -2.34
RNU4-28P-201ENST00000364739 GLI3P10071 1580 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 A0A087WUU8 490 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 TRAPPC13A5PLN9 417 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 H3BT86 120 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 PPBPP02775 128 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 LGALS1P09382 135 aaKnown RBP0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 CRATP43155 626 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 BTN3A2P78410 334 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 OR4D1Q15615 310 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 DYNC2LI1Q8TCX1 351 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 TMA16Q96EY4 203 aaKnown RBP0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 EMC3Q9P0I2 261 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 ZFC3H1O60293 1989 aaKnown RBP0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 EML5Q05BV3 1969 aa0.45□□□□□ -2.34
RNU4-28P-201ENST00000364739 AHNAKQ09666 5890 aaKnown RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 PHGR1C9JFL3 82 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 COPEO14579 308 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 LIN7AO14910 233 aaPredicted RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 ADAP1O75689 374 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 BRI3O95415 125 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 RPL28P46779 137 aaKnown RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 ELOBQ15370 118 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 USF2Q15853 346 aaPredicted RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 Q8WTZ3 238 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 PPWD1Q96BP3 646 aaKnown RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 TLCD1Q96CP7 247 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 CCDC124Q96CT7 223 aaKnown RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 CPNE2Q96FN4 548 aaPredicted RBP0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 MSANTD3Q96H12 275 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 REG4Q9BYZ8 158 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 TMEM222Q9H0R3 208 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 CCDC88AQ3V6T2 1871 aa0.44□□□□□ -2.34
RNU4-28P-201ENST00000364739 LAMA4Q16363 1823 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 USP24Q9UPU5 2620 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 TRAV7A0A075B6U4 112 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 H7C2G1 150 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 TMEM33P57088 247 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 TBPL1P62380 186 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 SMAGPQ0VAQ4 97 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 MIAQ16674 131 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 EXOC3L4Q17RC7 722 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 DYNAPQ8N1N2 210 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 C9orf163Q8N9P6 203 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 SMIM12Q96EX1 92 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 HDGFL3Q9Y3E1 203 aa0.43□□□□□ -2.34
RNU4-28P-201ENST00000364739 SCAF11Q99590 1463 aaKnown RBP0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 SETD5Q9C0A6 1442 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 TRAV8-1A0A0A6YYK1 113 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 TRAV38-1A0A0B4J264 116 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 SYNGR1O43759 233 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 FADS2O95864 444 aaKnown RBP0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 ATP5G1P05496 136 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 PVALBP20472 110 aaPredicted RBP0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 GRPRP30550 384 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 CD79BP40259 229 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 TAS2R20P59543 309 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 KRTAP21-1Q3LI58 79 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 LFNGQ8NES3 379 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 ASCL3Q9NQ33 180 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 TNRC6BQ9UPQ9 1833 aaKnown RBP0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 TMEM94Q12767 1356 aa0.42□□□□□ -2.34
RNU4-28P-201ENST00000364739 OR6C6A6NF89 314 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 METTL15A6NJ78 407 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 CFL1P23528 166 aaKnown RBP0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 F8A1P23610 371 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 PSMB8P28062 276 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 ETV1P50549 477 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 H2BFSP57053 126 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 SAPCD1Q5SSQ6 148 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 BLIDQ8IZY5 108 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 C12orf43Q96C57 262 aaKnown RBP0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 LRRC45Q96CN5 670 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 CYTH2Q99418 400 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 MED10Q9BTT4 135 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 SMARCA4P51532 1647 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 ABCC12Q96J65 1359 aa0.41□□□□□ -2.34
RNU4-28P-201ENST00000364739 A0A0J9YW62 118 aa0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 GEMIN2O14893 280 aaKnown RBP0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 CREBL2O60519 120 aaPredicted RBP0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 NPPAP01160 153 aa0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 TRGC1P0CF51 173 aa0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 SYT1P21579 422 aa0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 EMP1P54849 157 aa0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 FXYD7P58549 80 aa0.4□□□□□ -2.35
RNU4-28P-201ENST00000364739 RAB14P61106 215 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms