RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ABCA11PQ4W5N1 156 aa17.62■□□□□ 0.41
SHMT1-203ENST00000354098 OR4C13Q8NGP0 309 aa17.62■□□□□ 0.41
SHMT1-203ENST00000354098 DEDD2Q8WXF8 326 aa17.62■□□□□ 0.41
SHMT1-203ENST00000354098 TMEM158Q8WZ71 300 aa17.62■□□□□ 0.41
SHMT1-203ENST00000354098 RAMP3O60896 148 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 SLC2A9Q9NRM0 540 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 SRRM4A7MD48 611 aaKnown RBP17.61■□□□□ 0.41
SHMT1-203ENST00000354098 NBR2O15453 112 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 PLA2G10O15496 165 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 RRASP10301 218 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 RAG2P55895 527 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 TMEM177Q53S58 311 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 FAM71E2Q8N5Q1 922 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 NPBQ8NG41 125 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 OR8H1Q8NGG4 311 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 ZNF702PQ9H963 129 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 GPR132Q9UNW8 380 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 SIGLEC9Q9Y336 463 aa17.61■□□□□ 0.41
SHMT1-203ENST00000354098 RNF212BA8MTL3 300 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 M0QZK8 103 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 FGF16O43320 207 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 TSPAN9O75954 239 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 PIGPP57054 158 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 CATR1Q13166 79 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 TBC1D26Q86UD7 250 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 SPAG16Q8N0X2 631 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 ZFAND1Q8TCF1 268 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 ZNF486Q96H40 463 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-203ENST00000354098 MDFIQ99750 246 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 RNF5Q99942 180 aa17.6■□□□□ 0.41
SHMT1-203ENST00000354098 RTBDNQ9BSG5 229 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-203ENST00000354098 SHOXO15266 292 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 NDUFA7O95182 113 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 IGLV2-23P01705 113 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 CCR6P51684 374 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 CBX3Q13185 183 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 HARBI1Q96MB7 349 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 PRSS22Q9GZN4 317 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 C5orf66Q9H5L9 145 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 VSIG4Q9Y279 399 aa17.59■□□□□ 0.41
SHMT1-203ENST00000354098 NDUFA3O95167 84 aa17.58■□□□□ 0.41
SHMT1-203ENST00000354098 CTSDP07339 412 aaPredicted RBP17.58■□□□□ 0.41
SHMT1-203ENST00000354098 ECI1P42126 302 aa17.58■□□□□ 0.41
SHMT1-203ENST00000354098 PSG5Q15238 335 aa17.58■□□□□ 0.41
SHMT1-203ENST00000354098 SURF2Q15527 256 aaPredicted RBP17.58■□□□□ 0.41
SHMT1-203ENST00000354098 C9orf152Q5JTZ5 239 aa17.58■□□□□ 0.41
SHMT1-203ENST00000354098 FBXL15Q9H469 300 aa17.58■□□□□ 0.41
SHMT1-203ENST00000354098 RANBP3Q9H6Z4 567 aaPredicted RBP17.58■□□□□ 0.41
SHMT1-203ENST00000354098 TMEM89A2RUT3 159 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 RRHO14718 337 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 MPPED1O15442 326 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 VSIG10L2P0DP72 767 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 MDKP21741 143 aaPredicted RBP17.58■□□□□ 0.4
SHMT1-203ENST00000354098 F2RP25116 425 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 BTCP35070 178 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 RND3P61587 244 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 IFITM3Q01628 133 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 OR4S2Q8NH73 311 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 LINC01006Q8NI28 216 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 TSNAXQ99598 290 aaKnown RBP17.58■□□□□ 0.4
SHMT1-203ENST00000354098 RASL11BQ9BPW5 248 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 LIN7CQ9NUP9 197 aaKnown RBP17.58■□□□□ 0.4
SHMT1-203ENST00000354098 KIAA1456Q9P272 454 aa17.58■□□□□ 0.4
SHMT1-203ENST00000354098 NAP1L6A6NFF2 107 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 SLC25A17O43808 307 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 UPK1BO75841 260 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 S100GP29377 79 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 LGALS7P47929 136 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 C5orf64Q2M2E5 130 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 Q8N2B8 174 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 OR4F5Q8NH21 305 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 OSR1Q8TAX0 266 aaPredicted RBP17.57■□□□□ 0.4
SHMT1-203ENST00000354098 C16orf95Q9H693 158 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 COPZ2Q9P299 210 aa17.57■□□□□ 0.4
SHMT1-203ENST00000354098 C14orf166Q9Y224 244 aaKnown RBP17.57■□□□□ 0.4
SHMT1-203ENST00000354098 CENPXA8MT69 81 aa17.56■□□□□ 0.4
SHMT1-203ENST00000354098 KIR2DS2P43631 304 aa17.56■□□□□ 0.4
SHMT1-203ENST00000354098 TMEM95Q3KNT9 176 aa17.56■□□□□ 0.4
SHMT1-203ENST00000354098 VKORC1L1Q8N0U8 176 aa17.56■□□□□ 0.4
SHMT1-203ENST00000354098 POC5Q8NA72 575 aa17.56■□□□□ 0.4
SHMT1-203ENST00000354098 ADAD2Q8NCV1 583 aaKnown RBP17.56■□□□□ 0.4
SHMT1-203ENST00000354098 C7orf50Q9BRJ6 194 aaKnown RBP17.56■□□□□ 0.4
SHMT1-203ENST00000354098 TPSG1Q9NRR2 321 aa17.56■□□□□ 0.4
SHMT1-203ENST00000354098 METTL1Q9UBP6 276 aaKnown RBP17.56■□□□□ 0.4
SHMT1-203ENST00000354098 LINC01548A6NM66 108 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 FCN1O00602 326 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 RBFOX2O43251 390 aaKnown RBP eCLIP17.55■□□□□ 0.4
SHMT1-203ENST00000354098 LYRM1O43325 122 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 ZNF585BQ52M93 769 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 HSPB9Q9BQS6 159 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 TBC1D24Q9ULP9 559 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 PLGLAQ15195 96 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 LIN54Q6MZP7 749 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 OR2T6Q8NHC8 308 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 CD300LFQ8TDQ1 290 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 CLCC1Q96S66 551 aa17.55■□□□□ 0.4
SHMT1-203ENST00000354098 COL6A5A8TX70 2615 aa17.54■□□□□ 0.4
SHMT1-203ENST00000354098 S1PR2O95136 353 aa17.54■□□□□ 0.4
SHMT1-203ENST00000354098 SPDEFO95238 335 aa17.54■□□□□ 0.4
SHMT1-203ENST00000354098 CRYGBP07316 175 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms