RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HBE1P02100 147 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 PTAFRP25105 342 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 DUTP33316 252 aaKnown RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 PRR30Q53SZ7 412 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-201ENST00000341247 NIPSNAP3BQ9BS92 247 aa8.58□□□□□ -1.04
LIMA1-201ENST00000341247 PIGBOS1A0A0B4J2F0 54 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 OPN1MWP04001 364 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 OPN1MW2P0DN77 364 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 OPN1MW3P0DN78 364 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 RPS10P46783 165 aaKnown RBP8.57□□□□□ -1.04
LIMA1-201ENST00000341247 MZT1Q08AG7 82 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 ZNF506Q5JVG8 444 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 IGFL3Q6UXB1 125 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 TMEM14EPQ6UXP3 125 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 FAM90A1Q86YD7 464 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 RPP25LQ8N5L8 163 aaKnown RBP8.57□□□□□ -1.04
LIMA1-201ENST00000341247 SNX22Q96L94 193 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 CALYQ9NYX4 217 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 BTBD17A6NE02 478 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 SOX15O60248 233 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 IFNA10P01566 189 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 MYOD1P15172 320 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 RAB5AP20339 215 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 COL8A2P25067 703 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 PPP1R35Q8TAP8 253 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 Q8TCH9 128 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 HSD17B10Q99714 261 aaKnown RBP8.57□□□□□ -1.04
LIMA1-201ENST00000341247 GCM1Q9NP62 436 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 CHD8Q9HCK8 2581 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 PTPRQQ9UMZ3 2332 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 LOC102723971A0A1B0GUV8 181 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 A8MXE2 369 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 IGHV1-46P01743 117 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 CRYABP02511 175 aaKnown RBP8.57□□□□□ -1.04
LIMA1-201ENST00000341247 MT-ND4LP03901 98 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 ADH4P08319 380 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 GZMHP20718 246 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 CD40P25942 277 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 SELENOVP59797 346 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 NKX6-1P78426 367 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-201ENST00000341247 RTP5Q14D33 572 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 GCSAMLQ5JQS6 135 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 FFAR4Q5NUL3 377 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 LYG1Q8N1E2 194 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 EDARADDQ8WWZ3 215 aa8.57□□□□□ -1.04
LIMA1-201ENST00000341247 MKRN2OSH3BPM6 223 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 MMP23AO75900 390 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 CCKARP32238 428 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 RHEBQ15382 184 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 LINC00518Q8N0U6 118 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 ABHD12Q8N2K0 398 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 OR4A16Q8NH70 328 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 WNT2P09544 360 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 P0C879 139 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 BCL2P10415 239 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 NDUFB7P17568 137 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 TMEM41BQ5BJD5 291 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 ASCL5Q7RTU5 278 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 OR5T1Q8NG75 326 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 SDSLQ96GA7 329 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 HEYLQ9NQ87 328 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-201ENST00000341247 A0A0G2JNJ9 132 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 RAB29O14966 203 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 TMPRSS2O15393 492 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 HSPB1P04792 205 aaKnown RBP8.56□□□□□ -1.04
LIMA1-201ENST00000341247 LOXL3P58215 753 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 EIF2S3LQ2VIR3 472 aaKnown RBP8.56□□□□□ -1.04
LIMA1-201ENST00000341247 ZNF66Q6ZN08 573 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 DOLPP1Q86YN1 238 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 FAM57AQ8TBR7 257 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 RPUSD4Q96CM3 377 aaKnown RBP8.56□□□□□ -1.04
LIMA1-201ENST00000341247 S1PR3Q99500 378 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 COA4Q9NYJ1 87 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 RNF7Q9UBF6 113 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 Q9UFV3 132 aa8.56□□□□□ -1.04
LIMA1-201ENST00000341247 COL6A6A6NMZ7 2263 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 FAM90A26D6RGX4 464 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 NQO2P16083 231 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 TUBG1P23258 451 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 HTD2P86397 168 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 IGF2-ASQ6U949 168 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 RBMS3Q6XE24 437 aaKnown RBP8.55□□□□□ -1.04
LIMA1-201ENST00000341247 OR10G4Q8NGN3 311 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 OR10G9Q8NGN4 311 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 OR10G7Q8NGN6 311 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 TVP23CQ96ET8 276 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 TMEM147Q9BVK8 224 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 IFI27L2Q9H2X8 130 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 UNKLQ9H9P5 680 aaKnown RBP8.55□□□□□ -1.04
LIMA1-201ENST00000341247 TUBG2Q9NRH3 451 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 A0A1B0GW64 132 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 PRRG2O14669 202 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 TIMP3P35625 211 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 CLEC12BQ2HXU8 276 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 KHDC3LQ587J8 217 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 GFRALQ6UXV0 394 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 ZNF709Q8N972 641 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 C12orf57Q99622 126 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 TGIF2-C20orf24A0A0A6YYL0 155 aa8.55□□□□□ -1.04
LIMA1-201ENST00000341247 MDKP21741 143 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms