RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MIDNQ504T8 468 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 ZNF833PQ6ZTB9 187 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 ACOT7LQ6ZUV0 252 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 PDZD9Q8IXQ8 264 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 INO80EQ8NBZ0 244 aaPredicted RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 OR10X1Q8NGY0 326 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 OR9G1Q8NH87 305 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 FAM216AQ8WUB2 273 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 PCNPQ8WW12 178 aaKnown RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 FAM168AQ92567 244 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 LSM10Q969L4 123 aaKnown RBP3.37□□□□□ -1.87
MCF2-201ENST00000338585 R3HDM4Q96D70 268 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SPIN2AQ99865 258 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SPIN2BQ9BPZ2 258 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 GON7Q9BXV9 100 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 C11orf1Q9H5F2 150 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 SLA2Q9H6Q3 261 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 LPAR2Q9HBW0 351 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 PRELID3BQ9Y3B1 194 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 MMP24Q9Y5R2 645 aa3.37□□□□□ -1.87
MCF2-201ENST00000338585 TENM4Q6N022 2769 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ABCA2Q9BZC7 2435 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 IGHV4-30-2A0A087WSY4 118 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 TRAV3A0A0B4J244 114 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 IGHV4-61A0A0C4DH41 118 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PRD5 423 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PRF3 423 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PRM7 423 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 FAM157AC9JC47 383 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OR2F2O95006 317 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 SPDEFO95238 335 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 IGLV1-47P01700 117 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 RLN2P04090 185 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OR9G9P0C7N8 305 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PET100P0DJ07 73 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PAX6P26367 422 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 RPL12P30050 165 aaKnown RBP3.36□□□□□ -1.87
MCF2-201ENST00000338585 THBS3P49746 956 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OR2B8PP59922 312 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OR2F1Q13607 317 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ZNF345Q14585 488 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 SPINK9Q5DT21 86 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 LDLRAD2Q5SZI1 272 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 TEX261Q6UWH6 196 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PNKDQ8N490 385 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 LINC00311Q8N616 119 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 TCTEX1D1Q8N7M0 179 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ZNF596Q8TC21 504 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 C10orf105Q8TEF2 133 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ST6GALNAC6Q969X2 333 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 RAB39BQ96DA2 213 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 AQP10Q96PS8 301 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 SMIM3Q9BZL3 60 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PLEKHA2Q9HB19 425 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 U3KQ87 197 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 IGHV3-72A0A0B4J1Y9 119 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 A0A0D9SG52 128 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 A0A1W2PPH5 198 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 IGSF23A1L1A6 192 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 FAM24AA6NFZ4 105 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 E5RGE8 158 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 H3BP45 60 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 WRBO00258 174 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 TOR1AO14656 332 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 RBFOX2O43251 390 aaKnown RBP eCLIP3.36□□□□□ -1.87
MCF2-201ENST00000338585 BCL2L11O43521 198 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 CHST1O43916 411 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 HPRT1P00492 218 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 IAPPP10997 89 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 SLC25A6P12236 298 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 CAV2P51636 162 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PAX9P55771 341 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 NHLH2Q02577 135 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PAX2Q02962 417 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 EXOSC2Q13868 293 aaKnown RBP3.36□□□□□ -1.87
MCF2-201ENST00000338585 HLA-DRB5Q30154 266 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OXLD1Q5BKU9 147 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 HCP5Q6MZN7 132 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ALKAL2Q6UX46 152 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 H2BFWTQ7Z2G1 175 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 C8orf31Q8N9H6 132 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ZNF680Q8NEM1 530 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OR4P4Q8NGL7 312 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 OR4S2Q8NH73 311 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 CD300LFQ8TDQ1 290 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ZDHHC16Q969W1 377 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 NABP2Q9BQ15 211 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 PIMREGQ9BSJ6 248 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ZNF471Q9BX82 626 aaPredicted RBP3.36□□□□□ -1.87
MCF2-201ENST00000338585 CLEC7AQ9BXN2 247 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ZC4H2Q9NQZ6 224 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 FAM212BQ9NTI7 297 aaPredicted RBP3.36□□□□□ -1.87
MCF2-201ENST00000338585 SLC35D1Q9NTN3 355 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 CENPEQ02224 2701 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 ABCA12Q86UK0 2595 aa3.36□□□□□ -1.87
MCF2-201ENST00000338585 KANTRA0A1W2PQU2 76 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 SRRM4A7MD48 611 aaKnown RBP3.35□□□□□ -1.87
MCF2-201ENST00000338585 VWC2LB2RUY7 222 aa3.35□□□□□ -1.87
MCF2-201ENST00000338585 H0YJW9 148 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms