RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ASCL3Q9NQ33 180 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 TRBV6-7A0A0A0MS04 114 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 FGF16O43320 207 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 NPBWR2P48146 333 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 GNG10P50151 68 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 ERVFRD-1P60508 538 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 TNXAQ16473 311 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 UCN2Q96RP3 112 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 SLC25A10Q9UBX3 287 aaPredicted RBP8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 IFITM10A6NMD0 228 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 RECKO95980 971 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 ID1P41134 155 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 SLC22A18ASQ8N1D0 253 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 ARL14EPLP0DKL9 152 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 TAS2R60P59551 318 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 JOSD1Q15040 202 aaPredicted RBP8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 RGP1Q92546 391 aaPredicted RBP8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 DNAJC4Q9NNZ3 241 aa8.85□□□□□ -0.99
CCDC88A-202ENST00000336838 LIPFP07098 398 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF735P0CB33 412 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 RPL31P62899 125 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 PARLQ9H300 379 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 INSIG2Q9Y5U4 225 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 RHBDL1O75783 438 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 LEPROTL1O95214 131 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 OR2H2O95918 312 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 OR8I2Q8N0Y5 310 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 ASPHD2Q6ICH7 369 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 C11orf42Q8N5U0 333 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 WNT2BQ93097 391 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 MPV17P39210 176 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 TNFSF10P50591 281 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 HSPE1P61604 102 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 MDP1Q86V88 176 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 CACNG8Q8WXS5 425 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 TP53RKQ96S44 253 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 PCGF1Q9BSM1 259 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 UCP2P55851 309 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 C8orf88P0DMB2 117 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 PRSS53Q2L4Q9 553 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 FAM214BQ7L5A3 538 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 SHISA5Q8N114 240 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 TEX29Q8N6K0 151 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 RHOVQ96L33 236 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 S1PR2O95136 353 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 MAGEA5P43359 124 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 OR4A5Q8NH83 315 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 TTTY12Q9BZ98 90 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 ARRDC1-AS1Q9H2J1 176 aa8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 TNRC6AQ8NDV7 1962 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-202ENST00000336838 LEMD1Q68G75 181 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 MRPL54Q6P161 138 aaKnown RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 OR52M1Q8NGK5 317 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 ODAMA1E959 279 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 OR5P3Q8WZ94 311 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 RCC1LQ96I51 464 aaKnown RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 PEF1Q9UBV8 284 aaKnown RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 TRAV34A0A0B4J273 112 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 HBBP68871 147 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 TWIST1Q15672 202 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 ZXDCQ2QGD7 858 aaPredicted RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 FAM131CQ96AQ9 280 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 NEUROG3Q9Y4Z2 214 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 SIGLEC5O15389 551 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 OR4C12Q96R67 309 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 AESQ08117 197 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 UNC119Q13432 240 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 PRR13Q9NZ81 148 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 RNF222A6NCQ9 220 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 GNB2P62879 340 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 RELBQ01201 579 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 COL10A1Q03692 680 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 OR1K1Q8NGR3 316 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 EGR4Q05215 589 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 LRRC75BQ2VPJ9 315 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 PAPPA-AS1Q5QFB9 102 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 DHRS13Q6UX07 377 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 ZNF385AQ96PM9 386 aaKnown RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 NPCDR1Q9BY65 106 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 RIF1Q5UIP0 2472 aaKnown RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 IGKV3D-11A0A0A0MRZ8 115 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 RPL7P18124 248 aaKnown RBP8.83□□□□□ -1
CCDC88A-202ENST00000336838 CLDND2Q8NHS1 167 aa8.83□□□□□ -1
CCDC88A-202ENST00000336838 NOTCH3Q9UM47 2321 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 C3orf80F5H4A9 247 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 PPP1CCP36873 323 aaKnown RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 KIR2DL2P43627 348 aaPredicted RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 OR51G1Q8NGK1 321 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 GSN-AS1Q9NRJ2 163 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 F12P00748 615 aaPredicted RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 MOGAT3Q86VF5 341 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 LRRC75AQ8NAA5 344 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 DNASE2BQ8WZ79 361 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 HDHD3Q9BSH5 251 aaPredicted RBP8.82□□□□□ -1
CCDC88A-202ENST00000336838 TINAGQ9UJW2 476 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 UFC1Q9Y3C8 167 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 A0A0J9YW62 118 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 GAGE10A6NGK3 116 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 C1QTNF9BB2RNN3 333 aa8.82□□□□□ -1
CCDC88A-202ENST00000336838 CA2P00918 260 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms