RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FGFBP3Q8TAT2 258 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 GATAD1Q8WUU5 269 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 TCF19Q9Y242 345 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 MEX3AA1L020 520 aaKnown RBP5.79□□□□□ -1.48
SF3B1-201ENST00000335508 CRYM-AS1A6NIL9 109 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF727A8MUV8 499 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 RHBDL1O75783 438 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 PCSK4Q6UW60 755 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 FAM168AQ92567 244 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 ACY3Q96HD9 319 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 TMEM167BQ9NRX6 74 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 RCC2Q9P258 522 aaKnown RBP5.79□□□□□ -1.48
SF3B1-201ENST00000335508 TNFSF18Q9UNG2 199 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 TIMM8BQ9Y5J9 83 aaPredicted RBP5.79□□□□□ -1.48
SF3B1-201ENST00000335508 MAP1LC3B2A6NCE7 125 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 NKX2-6A6NCS4 301 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 M0QZK8 103 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 PGLYRP1O75594 196 aaPredicted RBP5.79□□□□□ -1.48
SF3B1-201ENST00000335508 IGHV1-46P01743 117 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 CELA3BP08861 270 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 AGAP20933 346 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 ADIPOQQ15848 244 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF787Q6DD87 383 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 UBAC2Q8NBM4 344 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 SLC24A4Q8NFF2 622 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 SLC25A28Q96A46 364 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 MAP1LC3BQ9GZQ8 125 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 C5orf66Q9H5L9 145 aa5.79□□□□□ -1.48
SF3B1-201ENST00000335508 WT1P19544 449 aaPredicted RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 ERVS71-1P61550 626 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 S100A12P80511 92 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TNXAQ16473 311 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TMEM155Q4W5P6 130 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 H1FOOQ8IZA3 346 aaPredicted RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 Q8NFD4 153 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TRAV34A0A0B4J273 112 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 IGKV1-12A0A0C4DH73 117 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 A0A0G2JNJ9 132 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 IGKV1D-12P01611 117 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 ELLP55199 621 aaPredicted RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 NCMAPQ5T1S8 102 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 DCAF12L2Q5VW00 463 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TEX261Q6UWH6 196 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 LHFPL1Q86WI0 220 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 SDHCQ99643 169 aaPredicted RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 RNF5Q99942 180 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 NKX6-2Q9C056 277 aaPredicted RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 PATZ1Q9HBE1 687 aaKnown RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 MED9Q9NWA0 146 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 Q9UFV3 132 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 OPRK1P41145 380 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 HGFACQ04756 655 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 SRSF6Q13247 344 aaKnown RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF672Q499Z4 452 aaPredicted RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 PDPNQ86YL7 162 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 C19orf24Q9BVV8 132 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 MDFIC2A0A1B0GVS7 189 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 CD8AP01732 235 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 KHDC1LQ5JSQ8 128 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 ZNF645Q8N7E2 425 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 OR2T10Q8NGZ9 312 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 Q8WTZ3 238 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 VSIG4Q9Y279 399 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 COX19Q49B96 90 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 RPL7L1Q6DKI1 246 aaKnown RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TEPPQ6URK8 271 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 AQP10Q96PS8 301 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TOLLIPQ9H0E2 274 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 SMCO4Q9NRQ5 59 aa5.78□□□□□ -1.48
SF3B1-201ENST00000335508 TECRQ9NZ01 308 aaKnown RBP5.78□□□□□ -1.48
SF3B1-201ENST00000335508 CTXND1A0A1B0GTU2 59 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 XKRY2A2RUG3 117 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 GYPAP02724 150 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 OR4F17Q8NGA8 305 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 OR4F5Q8NH21 305 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 WFIKKN1Q96NZ8 548 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 OR4F4Q96R69 305 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 SMIM7Q9BQ49 75 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 A0A1W2PNU3 283 aaPredicted RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 NPIPB11E5RHQ5 1161 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 COX7A2P2O60397 106 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 VSIG10L2P0DP72 767 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 LMO1P25800 156 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 ZP1P60852 638 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 B2MP61769 119 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 SLC35B1P78383 322 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 PNRC1Q12796 327 aaPredicted RBP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 FAM122CQ6P4D5 195 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 BVESQ8NE79 360 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 OR13A1Q8NGR1 328 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 CACNG8Q8WXS5 425 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 MALSU1Q96EH3 234 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 WNT9BO14905 357 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 ACSM6Q6P461 480 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 OR8I2Q8N0Y5 310 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 PUS1Q9Y606 427 aaKnown RBP eCLIP5.77□□□□□ -1.49
SF3B1-201ENST00000335508 FAM157AC9JC47 383 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 THBDP07204 575 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 SSTR5P35346 364 aa5.77□□□□□ -1.49
SF3B1-201ENST00000335508 EFNB3Q15768 340 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms