RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KNTC1P50748 2209 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 TRAV24A0A0B4J272 114 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 ZIC3O60481 467 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 CDC34P49427 236 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 CLDN15P56746 228 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 PSG7Q13046 419 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 FAM19A2Q8N3H0 131 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 SIGLECL1Q8N7X8 197 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 TECTBQ96PL2 329 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 DEFB126Q9BYW3 111 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 GNB4Q9HAV0 340 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 DEPPQ9NTK1 212 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 TP73-AS1Q9UF72 201 aa11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 TBL2Q9Y4P3 447 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-201ENST00000331194 CCL3P10147 92 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 SRFP11831 508 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 RANP62826 216 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 SUMO1P63165 101 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 OR4C5Q8NGB2 326 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 APH1AQ96BI3 265 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 STARD4Q96DR4 205 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 SNURFLB1AK76 121 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 TRAPPC2LH3BP13 241 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 CTRLP40313 264 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 CCR5P51681 352 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 ASPHD1Q5U4P2 390 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 MRPL52Q86TS9 123 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 NUDT11Q96G61 164 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 ZNF552Q9H707 407 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 A0A096LPE4 126 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 TMEM238LA0A1B0GVL6 79 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 A0A1W2PPZ6 126 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 HSBP1L1C9JCN9 74 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 K7EP13 123 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 CTXN2P0C2S0 81 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 Q5PR19 223 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 LCN12Q6JVE5 192 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 S100A7AQ86SG5 101 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 GCNT2Q8N0V5 402 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 OR10G8Q8NGN5 311 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 MRGPRDQ8TDS7 321 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 APOBEC3DQ96AK3 386 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 DOCK10Q96BY6 2186 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 CHRNA10Q9GZZ6 450 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 NRN1Q9NPD7 142 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 TIMM9Q9Y5J7 89 aa11.31□□□□□ -0.6
CCDC88C-201ENST00000331194 PMS2P5A8MQ11 134 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 K7EN84 100 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 GDF9O60383 454 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 GPX1P07203 203 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 TIMP3P35625 211 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 HNRNPA3P51991 378 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 C17orf82Q86X59 251 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 C1orf174Q8IYL3 243 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 ZNF808Q8N4W9 903 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 IFI44Q8TCB0 444 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 FOXB1Q99853 325 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 TMEM147Q9BVK8 224 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 IGHV1OR15-9A0A0B4J2B8 117 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 C10orf142B7Z368 130 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 IGLC2P0DOY2 106 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 IGLC3P0DOY3 106 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 AMTP48728 403 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 YRDCQ86U90 279 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 PLXDC1Q8IUK5 500 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 DRAM1Q8N682 238 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 DEFB123Q8N688 67 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 OR10P1Q8NGE3 313 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 AHCTF1Q8WYP5 2266 aa11.3□□□□□ -0.6
CCDC88C-201ENST00000331194 RBMXL2O75526 392 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 RHBDL1O75783 438 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 CLDN14O95500 239 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 ST6GALNAC3Q8NDV1 305 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 SLC45A2Q9UMX9 530 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 MAP1BP46821 2468 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 RRHO14718 337 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 TMPRSS2O15393 492 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 NGFP01138 241 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 UBE2V1Q13404 147 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 MKXQ8IYA7 352 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 AGBL5Q8NDL9 886 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 KIAA1549Q9HCM3 1950 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 CNOT1A5YKK6 2376 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 RIF1Q5UIP0 2472 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 A0A1W2PN81 502 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 RPL30P62888 115 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 LPAL2Q16609 132 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 LDLRAD2Q5SZI1 272 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 WDR74Q6RFH5 385 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 AAED1Q7RTV5 226 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 CLUHP3Q96NS8 147 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 UHRF2Q96PU4 802 aa11.29□□□□□ -0.6
CCDC88C-201ENST00000331194 ODAMA1E959 279 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 LMO7DNF2Z398 122 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 ARL14EPLP0DKL9 152 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 CD99P14209 185 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 PRR31Q5SQ13 230 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 OR8I2Q8N0Y5 310 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 Q8N7P7 452 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 QTRT1Q9BXR0 403 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms