RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 PMS2P5A8MQ11 134 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 OPN1MWP04001 364 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 OPN1MW2P0DN77 364 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 OPN1MW3P0DN78 364 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 PMS2P11Q13670 270 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 ADIRFQ15847 76 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 SPACA3Q8IXA5 215 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 GATAD1Q8WUU5 269 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 ZDHHC16Q969W1 377 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 TIMM9Q9Y5J7 89 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 ZNF729A6NN14 1252 aaPredicted RBP13.4□□□□□ -0.26
USHBP1-202ENST00000324554 IFNL4K9M1U5 179 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 FABP4P15090 132 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 LINC00205P59089 165 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 RPUSD4Q96CM3 377 aaKnown RBP13.4□□□□□ -0.26
USHBP1-202ENST00000324554 ABHD17AQ96GS6 310 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 SNX22Q96L94 193 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 PRDM13Q9H4Q3 707 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 ZNF71Q9NQZ8 489 aaPredicted RBP13.4□□□□□ -0.26
USHBP1-202ENST00000324554 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.4□□□□□ -0.26
USHBP1-202ENST00000324554 NAT8Q9UHE5 227 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 IGF2RP11717 2491 aa13.4□□□□□ -0.26
USHBP1-202ENST00000324554 IGHV3-43A0A0B4J1X8 118 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 OR5H1A6NKK0 313 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 ZG16O60844 167 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 IGLV1-44P01699 117 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 IGHV3-43DP0DP04 118 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 TUBG1P23258 451 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 TFF3Q07654 80 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 SMIM21Q3B7S5 101 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 NCR3LG1Q68D85 454 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 CYP2G1PQ6ZSU1 146 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 RPRMLQ8N4K4 120 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 SARAFQ96BY9 339 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 AGMATQ9BSE5 352 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 CTDSP1Q9GZU7 261 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 TUBG2Q9NRH3 451 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 NBEAQ8NFP9 2946 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 DEFA4P12838 97 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 ZNF718Q3SXZ3 478 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 C16orf82Q7Z2V1 217 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 LURAP1Q96LR2 239 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 PLSCR4Q9NRQ2 329 aa13.39□□□□□ -0.27
USHBP1-202ENST00000324554 IGHV2OR16-5A0A0B4J2B6 119 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 IGHV1-18A0A0C4DH31 117 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 LINC00473A8K010 186 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 KBTBD11O94819 623 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 CLDN14O95500 239 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 GCH1P30793 250 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 TMEM241Q24JQ0 296 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 SPINK9Q5DT21 86 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 MBNL2Q5VZF2 373 aaKnown RBP13.38□□□□□ -0.27
USHBP1-202ENST00000324554 IGFL3Q6UXB1 125 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 NECAP1Q8NC96 275 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 RFESDQ8TAC1 157 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 PFDN5Q99471 154 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 INTS1Q8N201 2190 aaKnown RBP13.38□□□□□ -0.27
USHBP1-202ENST00000324554 PFN1P07737 140 aaKnown RBP13.38□□□□□ -0.27
USHBP1-202ENST00000324554 FGF7P21781 194 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 RPL23P62829 140 aaKnown RBP13.38□□□□□ -0.27
USHBP1-202ENST00000324554 Q6ZS92 163 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 CD177Q8N6Q3 437 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 TCTEX1D1Q8N7M0 179 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 OR10G9Q8NGN4 311 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 OR10G7Q8NGN6 311 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 OR4X1Q8NH49 305 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 DTD1Q8TEA8 209 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 TMEM147Q9BVK8 224 aa13.38□□□□□ -0.27
USHBP1-202ENST00000324554 OPN3Q9H1Y3 402 aaPredicted RBP13.38□□□□□ -0.27
USHBP1-202ENST00000324554 CTXND1A0A1B0GTU2 59 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 DEFB108AA8MXU0 73 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 RAB29O14966 203 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 ST8SIA5O15466 376 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 TNFSF13O75888 250 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 HIST1H1BP16401 226 aaKnown RBP13.37□□□□□ -0.27
USHBP1-202ENST00000324554 Q3ZCU0 254 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 ZNF66Q6ZN08 573 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 OR10A7Q8NGE5 316 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 DCTN5Q9BTE1 182 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 PARLQ9H300 379 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 DKK4Q9UBT3 224 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 PSG11Q9UQ72 335 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 TP53TG5Q9Y2B4 290 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 A0A1B0GWJ7 208 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 C15orf65H3BRN8 121 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 TGOLN2O43493 480 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 PSMB3P49720 205 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 ATP6V1FQ16864 119 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 BSXQ3C1V8 233 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 FFAR4Q5NUL3 377 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 H2BFWTQ7Z2G1 175 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 LINC00469Q8N7U9 141 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 LRRC29Q8WV35 223 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 HIST1H2BLQ99880 126 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 LAMP3Q9UQV4 416 aa13.37□□□□□ -0.27
USHBP1-202ENST00000324554 GZMHP20718 246 aa13.36□□□□□ -0.27
USHBP1-202ENST00000324554 PAX5Q02548 391 aa13.36□□□□□ -0.27
USHBP1-202ENST00000324554 OR10P1Q8NGE3 313 aa13.36□□□□□ -0.27
USHBP1-202ENST00000324554 RAB24Q969Q5 203 aa13.36□□□□□ -0.27
USHBP1-202ENST00000324554 NPCDR1Q9BY65 106 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms