RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MST1LQ2TV78 715 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 CYB5R2Q6BCY4 276 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 PERPQ96FX8 193 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 VWA1Q6PCB0 445 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 NPCDR1Q9BY65 106 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 PARD6GQ9BYG4 376 aaPredicted RBP16.49■□□□□ 0.23
USP48-201ENST00000308271 SRXN1Q9BYN0 137 aa16.49■□□□□ 0.23
USP48-201ENST00000308271 RPL24P83731 157 aaKnown RBP16.48■□□□□ 0.23
USP48-201ENST00000308271 C3AR1Q16581 482 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 TMEM97Q5BJF2 176 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 CALHM1Q8IU99 346 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 OR1L8Q8NGR8 309 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 OR51B2Q9Y5P1 312 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 TRAV17A0A0B4J275 112 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 RSPO4Q2I0M5 234 aaPredicted RBP16.48■□□□□ 0.23
USP48-201ENST00000308271 OR4A47Q6IF82 309 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 UBALD2Q8IYN6 164 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 FAM216AQ8WUB2 273 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 PAXXQ9BUH6 204 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 TNFAIP6P98066 277 aaPredicted RBP16.48■□□□□ 0.23
USP48-201ENST00000308271 GFI1BQ5VTD9 330 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 MOB3BQ86TA1 216 aa16.48■□□□□ 0.23
USP48-201ENST00000308271 CORTO00230 105 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 KIAA1644Q3SXP7 199 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 TPRX1Q8N7U7 411 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 MBD3L1Q8WWY6 194 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 DUSP15Q9H1R2 295 aaPredicted RBP16.47■□□□□ 0.23
USP48-201ENST00000308271 CASP8AP2Q9UKL3 1982 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 MGST3O14880 152 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 PRDX2P32119 198 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 QRFPP83859 136 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 DNM1P46Q6ZS02 220 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 CDC42EP3Q9UKI2 254 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 R4GN57 208 aa16.47■□□□□ 0.23
USP48-201ENST00000308271 TRAV9-1A0A075B6T8 112 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 TRAV1-1A0A0B4J248 108 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 WFDC8Q8IUA0 241 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 MIEN1Q9BRT3 115 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 GPX4P36969 197 aaPredicted RBP16.46■□□□□ 0.23
USP48-201ENST00000308271 LYZL4Q96KX0 146 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 VWA8A3KMH1 1905 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 PROB1E7EW31 1015 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 SLC25A45Q8N413 288 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 SMRP1Q8NCR6 262 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 HARBI1Q96MB7 349 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 SFXN3Q9BWM7 321 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 IL36BQ9NZH7 164 aa16.46■□□□□ 0.23
USP48-201ENST00000308271 GCHFRP30047 84 aa16.46■□□□□ 0.22
USP48-201ENST00000308271 ERVFRD-1P60508 538 aa16.46■□□□□ 0.22
USP48-201ENST00000308271 DMRTA1Q5VZB9 504 aa16.46■□□□□ 0.22
USP48-201ENST00000308271 IER2Q9BTL4 223 aa16.46■□□□□ 0.22
USP48-201ENST00000308271 FOXJ2Q9P0K8 574 aa16.46■□□□□ 0.22
USP48-201ENST00000308271 ARHGEF17Q96PE2 2063 aaPredicted RBP16.45■□□□□ 0.22
USP48-201ENST00000308271 DPRXA6NFQ7 191 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 WNT5AP41221 380 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 DMRTA2Q96SC8 542 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 CLEC3BP05452 202 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 CRYBB3P26998 211 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 LYZP61626 148 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 RPL31P62899 125 aaKnown RBP16.45■□□□□ 0.22
USP48-201ENST00000308271 DNLZQ5SXM8 178 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 C10orf91Q5T1B1 145 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 VWCEQ96DN2 955 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 SCN8AQ9UQD0 1980 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 NDUFS6O75380 124 aaKnown RBP16.45■□□□□ 0.22
USP48-201ENST00000308271 AMBPP02760 352 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 NUBP1P53384 320 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 HS3ST3B1Q9Y662 390 aa16.45■□□□□ 0.22
USP48-201ENST00000308271 ODAMA1E959 279 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 HSPE1P61604 102 aaKnown RBP16.44■□□□□ 0.22
USP48-201ENST00000308271 P2RY6Q15077 328 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 SLC25A34Q6PIV7 304 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 OR5P3Q8WZ94 311 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 CEACAM18A8MTB9 384 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 LEPROTL1O95214 131 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 FXYD3Q14802 87 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 PCOLCEQ15113 449 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 MOGAT3Q86VF5 341 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 A0A1W2PR77 199 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 PRRG2O14669 202 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 ZNF137PP52743 207 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 FLYWCH2Q96CP2 140 aaKnown RBP16.44■□□□□ 0.22
USP48-201ENST00000308271 GNB4Q9HAV0 340 aa16.44■□□□□ 0.22
USP48-201ENST00000308271 CHCHD2Q9Y6H1 151 aaPredicted RBP16.44■□□□□ 0.22
USP48-201ENST00000308271 ZNHIT1O43257 154 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 SELENOTP62341 195 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 IGKV1D-13A0A0B4J2D9 117 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 IGKV1-13P0DP09 117 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 UCP2P55851 309 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 TIMD4Q96H15 378 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 C19orf24Q9BVV8 132 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 TMEM140Q9NV12 185 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 TCF19Q9Y242 345 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 CACNA1DQ01668 2161 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 LOC102724200A0A096LPH7 203 aaPredicted RBP16.43■□□□□ 0.22
USP48-201ENST00000308271 CEACAM1P13688 526 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 C9JQL5 133 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 RHBDL1O75783 438 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 C8orf88P0DMB2 117 aa16.43■□□□□ 0.22
USP48-201ENST00000308271 BEND2Q8NDZ0 799 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms