RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 DOCK3Q8IZD9 2030 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 SCTP09683 121 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 Q6ZT83 130 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 CYB561D1Q8N8Q1 229 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 LRRC75AQ8NAA5 344 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.42■□□□□ 0.22
UPF1-201ENST00000262803 A0A1W2PR77 199 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 C1QL1O75973 258 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 ABHD12Q8N2K0 398 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 DLL3Q9NYJ7 618 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 HLA-DQA1P01909 254 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 IER3P46695 156 aa16.42■□□□□ 0.22
UPF1-201ENST00000262803 KLF14Q8TD94 323 aaPredicted RBP16.42■□□□□ 0.22
UPF1-201ENST00000262803 ASXL3Q9C0F0 2248 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 TM4SF5O14894 197 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 H2BFSP57053 126 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 C1QTNF12Q5T7M4 302 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 TMEM70Q9BUB7 260 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 A0A1W2PPE3 182 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 HSPB1P04792 205 aaKnown RBP16.41■□□□□ 0.22
UPF1-201ENST00000262803 PUSL1Q8N0Z8 303 aaKnown RBP16.41■□□□□ 0.22
UPF1-201ENST00000262803 IFITM10A6NMD0 228 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 ZNHIT1O43257 154 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 UBE2V2Q15819 145 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 RBKSQ9H477 322 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 PIKFYVEQ9Y2I7 2098 aa16.41■□□□□ 0.22
UPF1-201ENST00000262803 CYB5R3P00387 301 aaPredicted RBP16.4■□□□□ 0.22
UPF1-201ENST00000262803 GLRXP35754 106 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 NUTF2P61970 127 aaKnown RBP16.4■□□□□ 0.22
UPF1-201ENST00000262803 FAM209BQ5JX69 171 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 FAM90A1Q86YD7 464 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 DCTN5Q9BTE1 182 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 TMEM140Q9NV12 185 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 SIGLEC5O15389 551 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 RSG1Q9BU20 258 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 ZMAT5Q9UDW3 170 aaKnown RBP16.4■□□□□ 0.22
UPF1-201ENST00000262803 PGLYRP1O75594 196 aaPredicted RBP16.4■□□□□ 0.22
UPF1-201ENST00000262803 GCGP01275 180 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 MS4A3Q96HJ5 214 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 DUX5Q96PT3 197 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 G6PC2Q9NQR9 355 aa16.4■□□□□ 0.22
UPF1-201ENST00000262803 PF4P02776 101 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 C8orf88P0DMB2 117 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 CRYBA2P53672 197 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 RAB37Q96AX2 223 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 DNAJC4Q9NNZ3 241 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 MRPS18CQ9Y3D5 142 aaKnown RBP16.39■□□□□ 0.21
UPF1-201ENST00000262803 NPPCP23582 126 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 CIRBPQ14011 172 aaKnown RBP16.39■□□□□ 0.21
UPF1-201ENST00000262803 OR8A1Q8NGG7 326 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 A0A0G2JLM5 398 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 HERPUD1Q15011 391 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 JMJD8Q96S16 334 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 MAP1LC3AQ9H492 121 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 NRXN2Q9P2S2 1712 aa16.39■□□□□ 0.21
UPF1-201ENST00000262803 ZNFX1Q9P2E3 1918 aaKnown RBP16.39■□□□□ 0.21
UPF1-201ENST00000262803 SHISA3A0PJX4 238 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 SNAI3Q3KNW1 292 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 Q5BKY6 102 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 ZNF98A6NK75 572 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 IBA57Q5T440 356 aaKnown RBP16.38■□□□□ 0.21
UPF1-201ENST00000262803 SDHCQ99643 169 aaPredicted RBP16.38■□□□□ 0.21
UPF1-201ENST00000262803 THY1P04216 161 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 CHODLQ9H9P2 273 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 ZNF256Q9Y2P7 627 aaPredicted RBP16.38■□□□□ 0.21
UPF1-201ENST00000262803 FAM181BA6NEQ2 426 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 KBTBD11O94819 623 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 HKR1P10072 659 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 BTF3P20290 206 aaKnown RBP16.38■□□□□ 0.21
UPF1-201ENST00000262803 ADIPOQQ15848 244 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 PHLDA3Q9Y5J5 127 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 ZNF324O75467 553 aaPredicted RBP16.38■□□□□ 0.21
UPF1-201ENST00000262803 PPP1R17O96001 155 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 RND2P52198 227 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 EGR4Q05215 589 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 NSUN5P2Q63ZY6 315 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 AQP10Q96PS8 301 aa16.38■□□□□ 0.21
UPF1-201ENST00000262803 KLF4O43474 513 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 ZNF841Q6ZN19 808 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 ZNF383Q8NA42 475 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 OR51G1Q8NGK1 321 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 SMIM8Q96KF7 97 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 GUCD1Q96NT3 240 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 C5orf66Q9H5L9 145 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 MFAP2P55001 183 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 SAPCD1Q5SSQ6 148 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 MYOFQ9NZM1 2061 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 APELAP0DMC3 54 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 ZNF137PP52743 207 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 PPP1R32Q7Z5V6 425 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 TAF15Q92804 592 aaKnown RBP eCLIP16.37■□□□□ 0.21
UPF1-201ENST00000262803 WNT5BQ9H1J7 359 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 SCN4AP35499 1836 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 H7C1H1 209 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 ANOS1P23352 680 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 RPS11P62280 158 aaKnown RBP eCLIP16.37■□□□□ 0.21
UPF1-201ENST00000262803 CENPVQ7Z7K6 275 aaPredicted RBP16.37■□□□□ 0.21
UPF1-201ENST00000262803 SMIM12Q96EX1 92 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 Q96M66 194 aa16.37■□□□□ 0.21
UPF1-201ENST00000262803 A0A1W2PQM1 296 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms