RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NAT8BQ9UHF3 227 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 ZFP30Q9Y2G7 519 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 TYMSP04818 313 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 CLDN15P56746 228 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 OR10G8Q8NGN5 311 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 RFESDQ8TAC1 157 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 OR2D2Q9H210 308 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 DLL3Q9NYJ7 618 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 ODAMA1E959 279 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 M0QZ24 198 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 LHX2P50458 406 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 RPL30P62888 115 aaKnown RBP12.09□□□□□ -0.47
SDC1-201ENST00000254351 GAGE1Q13065 139 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 MRPL54Q6P161 138 aaKnown RBP12.09□□□□□ -0.47
SDC1-201ENST00000254351 TEX43Q6ZNM6 134 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 IL36GQ9NZH8 169 aa12.09□□□□□ -0.47
SDC1-201ENST00000254351 YPEL1O60688 119 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 LCN2P80188 198 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 HTD2P86397 168 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 SYT13Q7L8C5 426 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 CENPVQ7Z7K6 275 aaPredicted RBP12.08□□□□□ -0.48
SDC1-201ENST00000254351 VKORC1L1Q8N0U8 176 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 FADS6Q8N9I5 356 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 YPEL2Q96QA6 119 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 GNB4Q9HAV0 340 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 MRPS17Q9Y2R5 130 aaKnown RBP12.08□□□□□ -0.48
SDC1-201ENST00000254351 ZNF503-AS2A6NEH8 195 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 PIAS2O75928 621 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 ACTL6BO94805 426 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 VAMP5O95183 116 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 LIFP15018 202 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 FOXL2NBQ6ZUU3 175 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 TMEM147Q9BVK8 224 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 WIPI2Q9Y4P8 454 aa12.08□□□□□ -0.48
SDC1-201ENST00000254351 CTXN2P0C2S0 81 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 MIC13Q5XKP0 118 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 C20orf144Q9BQM9 153 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 SERTAD4Q9NUC0 356 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 C19orf67A6NJJ6 358 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 CA1P00915 261 aaPredicted RBP12.07□□□□□ -0.48
SDC1-201ENST00000254351 TMEM144Q7Z5S9 345 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 DOLPP1Q86YN1 238 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 OR10D3Q8NH80 312 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 CACNA1EQ15878 2313 aa12.07□□□□□ -0.48
SDC1-201ENST00000254351 C17orf98A8MV24 154 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 CD27P26842 260 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 COMPP49747 757 aaPredicted RBP12.06□□□□□ -0.48
SDC1-201ENST00000254351 COTL1Q14019 142 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 TMEM14EPQ6UXP3 125 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 FAM58AQ8N1B3 248 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 NHLRC2Q8NBF2 726 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 OR52L2PQ8NGH6 319 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 HIPK2Q9H2X6 1198 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 NRN1Q9NPD7 142 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 LIN7CQ9NUP9 197 aaKnown RBP12.06□□□□□ -0.48
SDC1-201ENST00000254351 RARRES3Q9UL19 164 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 TIMM8BQ9Y5J9 83 aaPredicted RBP12.06□□□□□ -0.48
SDC1-201ENST00000254351 RRHO14718 337 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 MLNRO43193 412 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 TIMP3P35625 211 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 PSG7Q13046 419 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 C22orf15Q8WYQ4 148 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 TECTBQ96PL2 329 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 RNASE7Q9H1E1 156 aaKnown RBP12.06□□□□□ -0.48
SDC1-201ENST00000254351 ZNF586Q9NXT0 402 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 LAMTOR2Q9Y2Q5 125 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 A0A1W2PR77 199 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 ZNF253O75346 499 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 SPATA31B1PQ5VZV4 182 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 FBXW9Q5XUX1 488 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 GUSBP11Q6P575 273 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 ZC2HC1AQ96GY0 325 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 QTRT1Q9BXR0 403 aaKnown RBP12.06□□□□□ -0.48
SDC1-201ENST00000254351 OCIAD1Q9NX40 245 aa12.06□□□□□ -0.48
SDC1-201ENST00000254351 RP1L1Q8IWN7 2480 aaPredicted RBP12.05□□□□□ -0.48
SDC1-201ENST00000254351 ZNF318Q5VUA4 2279 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 K7EN84 100 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 HYPMO75409 117 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 FOXH1O75593 365 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 VENTXO95231 258 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 GLB1P16278 677 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 RPL31P62899 125 aaKnown RBP12.05□□□□□ -0.48
SDC1-201ENST00000254351 LEMD1Q68G75 181 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 C19orf25Q9UFG5 118 aaPredicted RBP12.05□□□□□ -0.48
SDC1-201ENST00000254351 DSCR4P56555 118 aaPredicted RBP12.05□□□□□ -0.48
SDC1-201ENST00000254351 RBX1P62877 108 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 CEACAM21Q3KPI0 293 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 Q6ZSR3 168 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 LYG1Q8N1E2 194 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 LSM10Q969L4 123 aaKnown RBP12.05□□□□□ -0.48
SDC1-201ENST00000254351 PROK2Q9HC23 129 aa12.05□□□□□ -0.48
SDC1-201ENST00000254351 EXPH5Q8NEV8 1989 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 SYNGR4O95473 234 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 GRPP07492 148 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 PDLIM3Q53GG5 364 aaPredicted RBP12.04□□□□□ -0.48
SDC1-201ENST00000254351 UBALD2Q8IYN6 164 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 GCM1Q9NP62 436 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 YTHDF2Q9Y5A9 579 aaKnown RBP12.04□□□□□ -0.48
SDC1-201ENST00000254351 IGLV3-32A0A0A0MS00 114 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 SRIP30626 198 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms