RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 CD55P08174 381 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 HIST1H1BP16401 226 aaKnown RBP13.15□□□□□ -0.3
LRFN1-201ENST00000248668 CDX1P47902 265 aaPredicted RBP13.15□□□□□ -0.3
LRFN1-201ENST00000248668 C1orf185Q5T7R7 199 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 LSM10Q969L4 123 aaKnown RBP13.15□□□□□ -0.3
LRFN1-201ENST00000248668 ZDHHC16Q969W1 377 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 PRSS47A8MTI9 375 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 ZNF727A8MUV8 499 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 IFNA17P01571 189 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 ELLP55199 621 aaPredicted RBP13.15□□□□□ -0.3
LRFN1-201ENST00000248668 BRWD1-AS2P59051 145 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 SPSB3Q6PJ21 355 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 GCSAMQ8N6F7 178 aa13.15□□□□□ -0.3
LRFN1-201ENST00000248668 FGF8P55075 233 aaPredicted RBP13.14□□□□□ -0.31
LRFN1-201ENST00000248668 KLF3P57682 345 aaPredicted RBP13.14□□□□□ -0.31
LRFN1-201ENST00000248668 UBE2KP61086 200 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 TGIF2LYQ8IUE0 185 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 KPTNQ9Y664 436 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 PTPRQQ9UMZ3 2332 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 COTL1Q14019 142 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 ZNF343Q6P1L6 599 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 IGF2-ASQ6U949 168 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 LCN15Q6UWW0 184 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 CISD2Q8N5K1 135 aaKnown RBP13.14□□□□□ -0.31
LRFN1-201ENST00000248668 WSB1Q9Y6I7 421 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 UBE2L5PA0A1B0GUS4 154 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 PAX6P26367 422 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 RTP5Q14D33 572 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 SCGB1C1Q8TD33 95 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 PBDC1Q9BVG4 233 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 RBKSQ9H477 322 aa13.14□□□□□ -0.31
LRFN1-201ENST00000248668 DSCAMO60469 2012 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 ODAMA1E959 279 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 C1QTNF9BB2RNN3 333 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 BATFQ16520 125 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 IGFL3Q6UXB1 125 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 ZCCHC24Q8N2G6 241 aaKnown RBP13.13□□□□□ -0.31
LRFN1-201ENST00000248668 GNPNAT1Q96EK6 184 aaPredicted RBP13.13□□□□□ -0.31
LRFN1-201ENST00000248668 ABHD17AQ96GS6 310 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 RNF212BA8MTL3 300 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 SPINT2O43291 252 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 MMP9P14780 707 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 TAS2R30P59541 319 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 TIMM23BQ5SRD1 257 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 VKORC1L1Q8N0U8 176 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 NEU1Q99519 415 aa13.13□□□□□ -0.31
LRFN1-201ENST00000248668 MRPL37Q9BZE1 423 aaKnown RBP13.13□□□□□ -0.31
LRFN1-201ENST00000248668 YLPM1P49750 1951 aaKnown RBP13.13□□□□□ -0.31
LRFN1-201ENST00000248668 HMGB3O15347 200 aaKnown RBP13.12□□□□□ -0.31
LRFN1-201ENST00000248668 SOD3P08294 240 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 SLC35B3Q9H1N7 401 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 RBFOX3A6NFN3 312 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 EREGO14944 169 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 ZG16O60844 167 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 ZNF737O75373 536 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 OR2C1O95371 312 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 TNFRSF9Q07011 255 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 CATR1Q13166 79 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 ZNF525Q8N782 197 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 OR4C12Q96R67 309 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 SRRM5B3KS81 715 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 DFFBO76075 338 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 KHDC3LQ587J8 217 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 RPL39P5Q59GN2 51 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 NCR3LG1Q68D85 454 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 RPRMQ9NS64 109 aa13.12□□□□□ -0.31
LRFN1-201ENST00000248668 A6NNC1 897 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 CYB5R3P00387 301 aaPredicted RBP13.11□□□□□ -0.31
LRFN1-201ENST00000248668 SLC25A6P12236 298 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 FOXC1Q12948 553 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 SOHLH1Q5JUK2 328 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 PRR7Q8TB68 274 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 GNG13Q9P2W3 67 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 TP53TG5Q9Y2B4 290 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 ZFP92A6NM28 416 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 FCGR3BO75015 233 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 COMMD1Q8N668 190 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 C15orf65H3BRN8 121 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 IFNL4K9M1U5 179 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 GPR12P47775 334 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 RPS23P62266 143 aaKnown RBP13.11□□□□□ -0.31
LRFN1-201ENST00000248668 SSX7Q7RTT5 188 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 H2BFWTQ7Z2G1 175 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 WFDC8Q8IUA0 241 aa13.11□□□□□ -0.31
LRFN1-201ENST00000248668 PKIAP61925 76 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 SLC38A11Q08AI6 406 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 PPP1R2P9O14990 202 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 CRYABP02511 175 aaKnown RBP13.1□□□□□ -0.31
LRFN1-201ENST00000248668 S100A7P31151 101 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 GLRXP35754 106 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 CD200P41217 278 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 AGMATQ9BSE5 352 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 ABCA4P78363 2273 aa13.1□□□□□ -0.31
LRFN1-201ENST00000248668 M0R1X1 148 aa13.09□□□□□ -0.31
LRFN1-201ENST00000248668 CYB561D1Q8N8Q1 229 aa13.09□□□□□ -0.31
LRFN1-201ENST00000248668 LFNGQ8NES3 379 aa13.09□□□□□ -0.31
LRFN1-201ENST00000248668 SNRNP40Q96DI7 357 aaKnown RBP13.09□□□□□ -0.31
LRFN1-201ENST00000248668 ZNF665Q9H7R5 613 aa13.09□□□□□ -0.31
LRFN1-201ENST00000248668 HCFC1P51610 2035 aa13.09□□□□□ -0.31
LRFN1-201ENST00000248668 CEBPZOSA8MTT3 80 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms