RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 LPAR6P43657 344 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 DVL1P1P54792 670 aaPredicted RBP10.58□□□□□ -0.72
HIF3A-201ENST00000244302 HTD2P86397 168 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 OR2B11Q5JQS5 317 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 UBAC2Q8NBM4 344 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 GLYATL2Q8WU03 294 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 NEIL1Q96FI4 390 aaPredicted RBP10.58□□□□□ -0.72
HIF3A-201ENST00000244302 ZNF714Q96N38 554 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 LPAR2Q9HBW0 351 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 GFOD1Q9NXC2 390 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 IDI2-AS1Q9NZ38 188 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 KPTNQ9Y664 436 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 NOTCH2Q04721 2471 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 PRRC2AP48634 2157 aaKnown RBP10.58□□□□□ -0.72
HIF3A-201ENST00000244302 ZNF98A6NK75 572 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 SFTA3P0C7M3 94 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 LCN2P80188 198 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 TMEM155Q4W5P6 130 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 OR8B3Q8NGG8 313 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 CLDND2Q8NHS1 167 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 NINJ1Q92982 152 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 OR8B2Q96RD0 313 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 ARV1Q9H2C2 271 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 NAA60Q9H7X0 242 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 SMCO4Q9NRQ5 59 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 RPUSD1Q9UJJ7 312 aaKnown RBP10.58□□□□□ -0.72
HIF3A-201ENST00000244302 KCNIP3Q9Y2W7 256 aa10.58□□□□□ -0.72
HIF3A-201ENST00000244302 IGHV4-61A0A0C4DH41 118 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 E5RGE8 158 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 ZNF16P17020 682 aaPredicted RBP10.57□□□□□ -0.72
HIF3A-201ENST00000244302 BRWD1-AS2P59051 145 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 LMO4P61968 165 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 ARF6P62330 175 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 S100A12P80511 92 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 DIAPH2-AS1Q14236 149 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 GALNT14Q96FL9 552 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 SUCNR1Q9BXA5 334 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 TMEM231Q9H6L2 316 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 FAM212BQ9NTI7 297 aaPredicted RBP10.57□□□□□ -0.72
HIF3A-201ENST00000244302 FBXL17Q9UF56 701 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 MIOXQ9UGB7 285 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 NSG2Q9Y328 171 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 PPIAL4CA0A0B4J2A2 164 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 ZNF729A6NN14 1252 aaPredicted RBP10.57□□□□□ -0.72
HIF3A-201ENST00000244302 LINC00473A8K010 186 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 PPIAL4GP0DN37 164 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 GNB2P62879 340 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 CTAG1AP78358 180 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 TMEM187Q14656 261 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 PEA15Q15121 130 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 IZUMO4Q1ZYL8 232 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 GGNBP1Q5YKI7 109 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 LYZL2Q7Z4W2 148 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 FOXRED2Q8IWF2 684 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 C15orf54Q8N8G6 183 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 LRTM2Q8N967 370 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 IFI27L2Q9H2X8 130 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 NCOR1P1Q9H4R4 102 aa10.57□□□□□ -0.72
HIF3A-201ENST00000244302 UBE2J1Q9Y385 318 aaPredicted RBP10.57□□□□□ -0.72
HIF3A-201ENST00000244302 BORCS7-ASMTA0A0B4J1R7 106 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 C3orf85A0A1B0GTC6 90 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 FAM157AC9JC47 383 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 GOSR1O95249 250 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 FSTL3O95633 263 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 IGHV2-5P01817 119 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 RAB5CP51148 216 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 MEF2CQ06413 473 aaPredicted RBP10.56□□□□□ -0.72
HIF3A-201ENST00000244302 Q3ZCU0 254 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 GPR157Q5UAW9 335 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 ODF3L1Q8IXM7 274 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 MAPK1IP1LQ8NDC0 245 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 ZNF439Q8NDP4 499 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 MSI2Q96DH6 328 aaKnown RBP10.56□□□□□ -0.72
HIF3A-201ENST00000244302 SSBP3Q9BWW4 388 aaPredicted RBP10.56□□□□□ -0.72
HIF3A-201ENST00000244302 TOLLIPQ9H0E2 274 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 LINC00574Q9H8X3 128 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 FAM96BQ9Y3D0 163 aa10.56□□□□□ -0.72
HIF3A-201ENST00000244302 KIAA1324LA8MWY0 1029 aaPredicted RBP10.55□□□□□ -0.72
HIF3A-201ENST00000244302 YPEL1O60688 119 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 RAMP3O60896 148 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 SEC11BP0C7V7 166 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 TRAT1Q6PIZ9 186 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 Q6ZRG5 221 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 Q8N7P7 452 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 RXFP4Q8TDU9 374 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 FAM168AQ92567 244 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 YPEL2Q96QA6 119 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 SIRT7Q9NRC8 400 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 JPT1Q9UK76 154 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 RAB5BP61020 215 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 EIF4EBP1Q13541 118 aaPredicted RBP10.55□□□□□ -0.72
HIF3A-201ENST00000244302 HEPN1Q6WQI6 88 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 LYG1Q8N1E2 194 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 C10orf105Q8TEF2 133 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 COA4Q9NYJ1 87 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 ONECUT1Q9UBC0 465 aa10.55□□□□□ -0.72
HIF3A-201ENST00000244302 STRAPQ9Y3F4 350 aaKnown RBP10.55□□□□□ -0.72
HIF3A-201ENST00000244302 CSPG4Q6UVK1 2322 aa10.54□□□□□ -0.72
HIF3A-201ENST00000244302 LOC105371242A0A075B767 164 aa10.54□□□□□ -0.72
HIF3A-201ENST00000244302 A0A1W2PRD5 423 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms