RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NPC2P61916 151 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 RPS18P62269 152 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TSPO2Q5TGU0 170 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TRNP1Q6NT89 227 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNRF2Q8NHG8 242 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CLEC4DQ8WXI8 215 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 KCNS1Q96KK3 526 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ARFGEF1Q9Y6D6 1849 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 LRRC7Q96NW7 1537 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 UGGT2Q9NYU1 1516 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM174Q8WUU8 243 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 NPIPB3Q92617 1050 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF576Q9H609 170 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A20PA6NIJ5 464 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 MCRIP1C9JLW8 97 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 OR1I1O60431 355 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 GPANK1O95872 356 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 B3GALT4O96024 378 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 IL5P05113 134 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 PMAIP1Q13794 54 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A52Q3SY17 297 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 RPEQ96AT9 228 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 IGHV2-5P01817 119 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM258P61165 79 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 RPS23P62266 143 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF660Q6AZW8 331 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 NMNAT3Q96T66 252 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 ERVK-7P63135 1459 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 H7C2G1 150 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 OR2A4O95047 310 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 NDUFA7O95182 113 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 KIR3DS1Q14943 382 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 PAGE3Q5JUK9 113 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 LY6G5BQ8NDX9 201 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 PP6455Q8WZ26 134 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 OR2A7Q96R45 310 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 UBR3Q6ZT12 1888 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 LAMB4A4D0S4 1761 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 IFITM5A6NNB3 132 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 K7ESF4 209 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 JTBO76095 146 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 EMDP50402 254 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SLC38A11Q08AI6 406 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 IL15RAQ13261 267 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SPHARQ15513 63 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 DMKNQ6E0U4 476 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 CLDN19Q8N6F1 224 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 Q96MF0 132 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 SMIM7Q9BQ49 75 aa3.06□□□□□ -1.92
SCN1A-221ENST00000641996 RPUSD1Q9UJJ7 312 aaKnown RBP3.06□□□□□ -1.92
SCN1A-221ENST00000641996 TRAV18A0A075B6X5 111 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 IGHV2OR16-5A0A0B4J2B6 119 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 EFNB2P52799 333 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 NXPH1P58417 271 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CFHR1Q03591 330 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CBLL1Q75N03 491 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF101Q8IZC7 436 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OR10J6PQ8NGY7 276 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 VSTM2AQ8TAG5 236 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SLC35B2Q8TB61 432 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 NPVFQ9HCQ7 196 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ZG16O60844 167 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 BCL3P20749 454 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ENTPD8Q5MY95 495 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ANKRD34AQ69YU3 496 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 XAF1Q6GPH4 301 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 RIMKLAQ8IXN7 391 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OR10G2Q8NGC3 310 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 UBE2E3Q969T4 207 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 NXT2Q9NPJ8 142 aaKnown RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 LRRC9Q6ZRR7 1453 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SMIM26A0A096LP01 95 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 TNFSF9P41273 254 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 DAD1P61803 113 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 DGCR2P98153 550 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 LRTM2Q8N967 370 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OR4X2Q8NGF9 303 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OR5AK2Q8NH90 309 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 C16orf92Q96LL3 132 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 RAXQ9Y2V3 346 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 YTHDF2Q9Y5A9 579 aaKnown RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 MAGI3Q5TCQ9 1506 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 A0A1W2PPV9 198 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM178BH3BS89 294 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 M0QZQ0 153 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 RRHO14718 337 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 APODP05090 189 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 HPNP05981 417 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PTGER1P34995 402 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 POLR2JP52435 117 aaKnown RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 RUNX3Q13761 415 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 IER5Q5VY09 327 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PRSS54Q6PEW0 395 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OR8A1Q8NGG7 326 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ABCA5Q8WWZ7 1642 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 C11orf98E9PRG8 122 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 C1QTNF9P0C862 333 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 GPX3P22352 226 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PFN2P35080 140 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CIRBPQ14011 172 aaKnown RBP3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms