RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 DYNLT3P51808 116 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 CORO2AQ92828 525 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 AGMATQ9BSE5 352 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 UQCC1Q9NVA1 299 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 PSENENQ9NZ42 101 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 RNF150Q9ULK6 438 aa15.24■□□□□ 0.03
CLN3-263ENST00000637871 C17orf100A8MU93 164 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 ABCD4O14678 606 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 TMEM50AO95807 157 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 PRH1P02810 166 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 CD5P06127 495 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 GPR12P47775 334 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 PEA15Q15121 130 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 Q6ZRM9 215 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 SPOCK3Q9BQ16 436 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 PBDC1Q9BVG4 233 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 LINC00574Q9H8X3 128 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 C19orf12Q9NSK7 152 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 HSPB7Q9UBY9 170 aa15.23■□□□□ 0.03
CLN3-263ENST00000637871 TRGV10A0A0A0MS01 117 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.22■□□□□ 0.03
CLN3-263ENST00000637871 A0A1B0GW64 132 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 DEFB108AA8MXU0 73 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 RNASEK-C17orf49H0YIS7 233 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 ZNF787Q6DD87 383 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 CLEC9AQ6UXN8 241 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 ZNF788Q6ZQV5 615 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 HSD17B11Q8NBQ5 300 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 OR10A7Q8NGE5 316 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 OR2G3Q8NGZ4 309 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 ESRP2Q9H6T0 727 aaKnown RBP15.22■□□□□ 0.03
CLN3-263ENST00000637871 CALYQ9NYX4 217 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 PLA2G2EQ9NZK7 142 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 PSG11Q9UQ72 335 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 PRELID3BQ9Y3B1 194 aa15.22■□□□□ 0.03
CLN3-263ENST00000637871 TRAV38-1A0A0B4J264 116 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 NKX6-3A6NJ46 265 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 ZNF729A6NN14 1252 aaPredicted RBP15.21■□□□□ 0.03
CLN3-263ENST00000637871 OR4A8P0C604 315 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 ATP6V0CP27449 155 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 UBE2KP61086 200 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 DEFA5Q01523 94 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 TNFRSF9Q07011 255 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 BSPH1Q075Z2 132 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 CLINT1Q14677 625 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 ADIPOQQ15848 244 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 ATP6V1FQ16864 119 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 PLPPR2Q96GM1 343 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 ADTRPQ96IZ2 230 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 CADP27708 2225 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 LRBAP50851 2863 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 FBN2P35556 2912 aa15.21■□□□□ 0.03
CLN3-263ENST00000637871 IGHV3OR15-7A0A075B7D8 119 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 KBTBD11-OT1A0A1B0GTJ5 212 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 F8W036 122 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 SIGLEC5O15389 551 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 SCO1O75880 301 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 CST7O76096 145 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 SNAPINO95295 136 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 HPRT1P00492 218 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 OMGP23515 440 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 SNCAP37840 140 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 EDDM3BP56851 147 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 LOXL3P58215 753 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 RAB2AP61019 212 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 RPL30P62888 115 aaKnown RBP15.21■□□□□ 0.02
CLN3-263ENST00000637871 H2BFWTQ7Z2G1 175 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 ODF3L1Q8IXM7 274 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 TPRX1Q8N7U7 411 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 RFESDQ8TAC1 157 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 SCGB1C1Q8TD33 95 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 CLN8Q9UBY8 286 aa15.21■□□□□ 0.02
CLN3-263ENST00000637871 PLAUP00749 431 aa15.2■□□□□ 0.02
CLN3-263ENST00000637871 CD80P33681 288 aa15.2■□□□□ 0.02
CLN3-263ENST00000637871 TAGLNQ01995 201 aaKnown RBP15.2■□□□□ 0.02
CLN3-263ENST00000637871 MEF2CQ06413 473 aaPredicted RBP15.2■□□□□ 0.02
CLN3-263ENST00000637871 ZNRF1Q8ND25 227 aa15.2■□□□□ 0.02
CLN3-263ENST00000637871 PSMG3Q9BT73 122 aaPredicted RBP15.2■□□□□ 0.02
CLN3-263ENST00000637871 NKX6-2Q9C056 277 aaPredicted RBP15.2■□□□□ 0.02
CLN3-263ENST00000637871 CHD3Q12873 2000 aaKnown RBP15.2■□□□□ 0.02
CLN3-263ENST00000637871 HBE1P02100 147 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 LOXP28300 417 aaPredicted RBP15.19■□□□□ 0.02
CLN3-263ENST00000637871 DUTP33316 252 aaKnown RBP15.19■□□□□ 0.02
CLN3-263ENST00000637871 Q3ZCU0 254 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 NCMAPQ5T1S8 102 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 ADAM5Q6NVV9 412 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 C5orf30Q96GV9 206 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 GAFA1Q96PS6 74 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 MS4A5Q9H3V2 200 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 GFOD1Q9NXC2 390 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 KPTNQ9Y664 436 aa15.19■□□□□ 0.02
CLN3-263ENST00000637871 A0A1W2PPR1 153 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 hADV38S2A0JD32 116 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 A6NNC1 897 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 C17orf98A8MV24 154 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 ST8SIA5O15466 376 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 KRASP01116 189 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 TFF1P04155 84 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 TLE4Q04727 773 aa15.18■□□□□ 0.02
CLN3-263ENST00000637871 ZNF616Q08AN1 781 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms