RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 OR52I2Q8NH67 350 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 OR10J5Q8NHC4 309 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 C15orf40Q8WUR7 153 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 RASL11BQ9BPW5 248 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 SOSTQ9BQB4 213 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 GHITMQ9H3K2 345 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 PIPOXQ9P0Z9 390 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 LINC00527Q9UJ94 153 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 RAB29O14966 203 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 ST8SIA5O15466 376 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 PYHIN1Q6K0P9 492 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 COMMD1Q8N668 190 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 RITA1Q96K30 269 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 GINS4Q9BRT9 223 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 RDH8Q9NYR8 311 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 ZNF580Q9UK33 172 aa15.15■□□□□ 0.02
CLN3-260ENST00000637578 FABP12A6NFH5 140 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 ARPC4P59998 168 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 SLC35B1P78383 322 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 DGCR2P98153 550 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 CCDC190Q86UF4 302 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 HSPB9Q9BQS6 159 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 ZFP57Q9NU63 452 aa15.14■□□□□ 0.01
CLN3-260ENST00000637578 CTXN2P0C2S0 81 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 PF4V1P10720 104 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 NAT1P18440 290 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 ACTBP60709 375 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 RPL23AP62750 156 aaKnown RBP15.13■□□□□ 0.01
CLN3-260ENST00000637578 OXLD1Q5BKU9 147 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 FAM131AQ6UXB0 335 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 H1FOOQ8IZA3 346 aaPredicted RBP15.13■□□□□ 0.01
CLN3-260ENST00000637578 NPBQ8NG41 125 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 TOLLIPQ9H0E2 274 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 C11orf54Q9H0W9 315 aaPredicted RBP15.13■□□□□ 0.01
CLN3-260ENST00000637578 RABL2AQ9UBK7 228 aaPredicted RBP15.13■□□□□ 0.01
CLN3-260ENST00000637578 KLK11Q9UBX7 282 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 RABL2BQ9UNT1 228 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 V9GYH0 126 aa15.13■□□□□ 0.01
CLN3-260ENST00000637578 GABARAPH6UMI1 98 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 IGF1P05019 195 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 CT45A6P0DMU7 189 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 CT45A5P0DMU8 189 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 CT45A7P0DMV0 189 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 RCVRNP35243 200 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 MRPS10P82664 201 aaKnown RBP15.12■□□□□ 0.01
CLN3-260ENST00000637578 CFHR3Q02985 330 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 OR5AP2Q8NGF4 316 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 SMIM4Q8WVI0 70 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 FCAMRQ8WWV6 532 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 EDARADDQ8WWZ3 215 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 GON7Q9BXV9 100 aa15.12■□□□□ 0.01
CLN3-260ENST00000637578 CTDSPLO15194 276 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 PROP1O75360 226 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 NFYAP23511 347 aaPredicted RBP15.11■□□□□ 0.01
CLN3-260ENST00000637578 HLA-DMAP28067 261 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 SLC6A1P30531 599 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 MMDQ15546 238 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 RPL39P5Q59GN2 51 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 TEX38Q6PEX7 206 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 LYSMD2Q8IV50 215 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 RNF152Q8N8N0 203 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 NECAP2Q9NVZ3 263 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 MTFP1Q9UDX5 166 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 NDUFA3O95167 84 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 KHDC1LQ5JSQ8 128 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 OR5AN1Q8NGI8 311 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 ABHD14BQ96IU4 210 aa15.11■□□□□ 0.01
CLN3-260ENST00000637578 OR5H14A6NHG9 310 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 NBR2O15453 112 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 RBBP9O75884 186 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 OR8U9P0C7N5 309 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 OR5H8P0DN80 308 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 CD33P20138 364 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 CNTFRP26992 372 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 ETV6P41212 452 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 RFX2P48378 723 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 TAS2R46P59540 309 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 CDK10Q15131 360 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 ZNF79Q15937 498 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 SPANXN2Q5MJ10 180 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 ETV3LQ6ZN32 361 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 OR8U1Q8NH10 309 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 EHFQ9NZC4 300 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 ZNF107Q9UII5 783 aaPredicted RBP15.1■□□□□ 0.01
CLN3-260ENST00000637578 RNF150Q9ULK6 438 aa15.1■□□□□ 0.01
CLN3-260ENST00000637578 H0YJW9 148 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 HLA-DRB1P01911 266 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 PMP2P02689 132 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 PF4P02776 101 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 MC5RP33032 325 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 HRH1P35367 487 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 FOXE3Q13461 319 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 C5orf64Q2M2E5 130 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 OR5H2Q8NGV7 314 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 PTTG2Q9NZH5 202 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 DNAH3Q8TD57 4116 aa15.09■□□□□ 0.01
CLN3-260ENST00000637578 GSTZ1O43708 216 aaPredicted RBP15.08■□□□□ 0
CLN3-260ENST00000637578 TUSC2O75896 110 aa15.08■□□□□ 0
CLN3-260ENST00000637578 IGHG4P01861 327 aa15.08■□□□□ 0
CLN3-260ENST00000637578 ELANEP08246 267 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms