RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 LOXL3P58215 753 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 BAXQ07812 192 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 TMEM182Q6ZP80 229 aaPredicted RBP12.97□□□□□ -0.33
CLN3-251ENST00000636853 FAM216BQ8N7L0 139 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 Q8TCH9 128 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 SDSLQ96GA7 329 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 GAFA1Q96PS6 74 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 KCNJ16Q9NPI9 418 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 CALYQ9NYX4 217 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 OR6C3Q9NZP0 311 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 METTL1Q9UBP6 276 aaKnown RBP12.97□□□□□ -0.33
CLN3-251ENST00000636853 CACFD1Q9UGQ2 172 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 RELNP78509 3460 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 POLEQ07864 2286 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 TXNL1O43396 289 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 PROP1O75360 226 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 PRH1P02810 166 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 ATP6V0CP27449 155 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 GPR12P47775 334 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 F2RL1P55085 397 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 ZNF616Q08AN1 781 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 EDARADDQ8WWZ3 215 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 NEUROG1Q92886 237 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 LEAP2Q969E1 77 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 KPTNQ9Y664 436 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 KALRNO60229 2985 aa12.97□□□□□ -0.33
CLN3-251ENST00000636853 TANC2Q9HCD6 1990 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 LINC00587B1AMM8 73 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 F2RL2O00254 374 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 YPEL1O60688 119 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 AGAP20933 346 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 S100PP25815 95 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 CAMLGP49069 296 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 ZNF134P52741 427 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 MSMO1Q15800 293 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 C17orf58Q2M2W7 97 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 ZNF66Q6ZN08 573 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 STX12Q86Y82 276 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 C2CD4CQ8TF44 421 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 YPEL2Q96QA6 119 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 HSD17B10Q99714 261 aaKnown RBP12.96□□□□□ -0.33
CLN3-251ENST00000636853 OR51M1Q9H341 326 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 ZNF665Q9H7R5 613 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 GSN-AS1Q9NRJ2 163 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 PSENENQ9NZ42 101 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 WSB1Q9Y6I7 421 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 PKDREJQ9NTG1 2253 aa12.96□□□□□ -0.33
CLN3-251ENST00000636853 ZZEF1O43149 2961 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 FAM157AC9JC47 383 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 CLDN14O95500 239 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 MT-ND4LP03901 98 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 TLE1Q04724 770 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 NCR3LG1Q68D85 454 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 LYPD6BQ8NI32 183 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 NANPQ8TBE9 248 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 FAM234AQ9H0X4 552 aa12.96□□□□□ -0.34
CLN3-251ENST00000636853 SLC31A2O15432 143 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 F12P00748 615 aaPredicted RBP12.95□□□□□ -0.34
CLN3-251ENST00000636853 SFTA3P0C7M3 94 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 METTL15P1P0C7V9 234 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 P0C879 139 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 CGB3P0DN86 165 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 CGB7P0DN87 165 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 TNFRSF1AP19438 455 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 NFYBP25208 207 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 DVL1P1P54792 670 aaPredicted RBP12.95□□□□□ -0.34
CLN3-251ENST00000636853 SNRPEP62304 92 aaKnown RBP12.95□□□□□ -0.34
CLN3-251ENST00000636853 RUNX1Q01196 453 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 MIDNQ504T8 468 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 RPL39P5Q59GN2 51 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 ZNF788Q6ZQV5 615 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 COMMD1Q8N668 190 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 OR2G3Q8NGZ4 309 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 SPTA1P02549 2419 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 A0A1W2PPE3 182 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 SHISA9B4DS77 424 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 SULT1A1P50225 295 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 TCF23Q7RTU1 214 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 ATP5SQ99766 215 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 C19orf12Q9NSK7 152 aa12.95□□□□□ -0.34
CLN3-251ENST00000636853 YLPM1P49750 1951 aaKnown RBP12.94□□□□□ -0.34
CLN3-251ENST00000636853 DOCK11Q5JSL3 2073 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 FAM90A27PA6NNH2 459 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 E7EQL1 145 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 GATCO43716 136 aaKnown RBP12.94□□□□□ -0.34
CLN3-251ENST00000636853 CD55P08174 381 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 DUTP33316 252 aaKnown RBP12.94□□□□□ -0.34
CLN3-251ENST00000636853 CASP6P55212 293 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 UBE2KP61086 200 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 TNFRSF9Q07011 255 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 ARL16Q0P5N6 197 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 FAM209BQ5JX69 171 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 SPANXN5Q5MJ07 72 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 TEX36Q5VZQ5 186 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 SSX8Q7RTT4 187 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 DMRTC2Q8IXT2 367 aaPredicted RBP12.94□□□□□ -0.34
CLN3-251ENST00000636853 FAM213BQ8TBF2 198 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 HIST1H2BAQ96A08 127 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 DIRC2Q96SL1 478 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 ABHD14AQ9BUJ0 271 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms