RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PECRQ9BY49 303 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 SLA2Q9H6Q3 261 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 RDH8Q9NYR8 311 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 STUB1Q9UNE7 303 aa12.37□□□□□ -0.43
CLN3-246ENST00000636228 C13orf42A0A1B0GVH6 325 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 CNIH1O95406 144 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 IGLV1-51P01701 117 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 RPS25P62851 125 aaKnown RBP12.36□□□□□ -0.43
CLN3-246ENST00000636228 PLAC9Q5JTB6 97 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 RNLSQ5VYX0 342 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 TMEM91Q6ZNR0 172 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 POC5Q8NA72 575 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 CITED4Q96RK1 184 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 CMSS1Q9BQ75 279 aaKnown RBP12.36□□□□□ -0.43
CLN3-246ENST00000636228 TM2D3Q9BRN9 247 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 RANGRFQ9HD47 186 aaPredicted RBP12.36□□□□□ -0.43
CLN3-246ENST00000636228 C12orf4Q9NQ89 552 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 SLC35D1Q9NTN3 355 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 NKX1-2Q9UD57 310 aaPredicted RBP12.36□□□□□ -0.43
CLN3-246ENST00000636228 ADAM30Q9UKF2 790 aa12.36□□□□□ -0.43
CLN3-246ENST00000636228 EPPK1P58107 5090 aaKnown RBP12.36□□□□□ -0.43
CLN3-246ENST00000636228 TRDCB7Z8K6 153 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 SLC17A2O00624 439 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 CASQ2O14958 399 aaPredicted RBP12.35□□□□□ -0.43
CLN3-246ENST00000636228 LDLRAD4O15165 306 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 SPDEFO95238 335 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 IGLV2-23P01705 113 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 APOA2P02652 100 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 HSMCR30P0CW71 290 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 APELAP0DMC3 54 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 RAB11BQ15907 218 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 PDPNQ86YL7 162 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 UFD1Q92890 307 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 C19orf73Q9NVV2 129 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 HSF4Q9ULV5 492 aa12.35□□□□□ -0.43
CLN3-246ENST00000636228 BET1O15155 118 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 TRBV12-3P01733 135 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 SYNJ2BPP57105 145 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 KLF5Q13887 457 aaPredicted RBP12.34□□□□□ -0.43
CLN3-246ENST00000636228 C2orf76Q3KRA6 126 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 IGSF11Q5DX21 431 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 IL34Q6ZMJ4 242 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 MAFIPQ8WZ33 124 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 MGAT4AQ9UM21 535 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 STARD9Q9P2P6 4700 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 SORL1Q92673 2214 aa12.34□□□□□ -0.43
CLN3-246ENST00000636228 SRRM4A7MD48 611 aaKnown RBP12.33□□□□□ -0.44
CLN3-246ENST00000636228 ATP6V1G2O95670 118 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 CRYGBP07316 175 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 ZP3P21754 424 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 IRF3Q14653 427 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 SGPP2Q8IWX5 399 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 BVESQ8NE79 360 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 C5orf30Q96GV9 206 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 SDHAF2Q9NX18 166 aa12.33□□□□□ -0.44
CLN3-246ENST00000636228 A0A0G2JLM5 398 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 RBMXL2O75526 392 aaKnown RBP12.32□□□□□ -0.44
CLN3-246ENST00000636228 GSTT2P0CG29 244 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 GSTT2BP0CG30 244 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 MOGAT2Q3SYC2 334 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 HES5Q5TA89 166 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 OR9G4Q8NGQ1 327 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 FAM3DQ96BQ1 224 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 HARBI1Q96MB7 349 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 OR2D2Q9H210 308 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 EDA2RQ9HAV5 297 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 SCN3BQ9NY72 215 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 COA4Q9NYJ1 87 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 KCNK7Q9Y2U2 307 aa12.32□□□□□ -0.44
CLN3-246ENST00000636228 LCE6AA0A183 80 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 H3BUA1 57 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 FABP7O15540 132 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 DENRO43583 198 aaKnown RBP12.31□□□□□ -0.44
CLN3-246ENST00000636228 CALRP27797 417 aaKnown RBP12.31□□□□□ -0.44
CLN3-246ENST00000636228 LGALS7P47929 136 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 FABP5Q01469 135 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 TPBGQ13641 420 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 MRGPRG-AS1Q2M3A8 158 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 ADAMTSL5Q6ZMM2 481 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 OR56B1Q8NGI3 324 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 OR4A4PQ8NGN8 299 aa12.31□□□□□ -0.44
CLN3-246ENST00000636228 TINAGL1Q9GZM7 467 aaPredicted RBP12.31□□□□□ -0.44
CLN3-246ENST00000636228 PEF1Q9UBV8 284 aaKnown RBP12.31□□□□□ -0.44
CLN3-246ENST00000636228 ZNF230Q9UIE0 474 aaPredicted RBP12.31□□□□□ -0.44
CLN3-246ENST00000636228 LYSTQ99698 3801 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 DNAH1Q9P2D7 4330 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 A0A075B6Q4 140 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 TMEM272A0A1B0GTI8 110 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 IZUMO1RA6ND01 250 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 MSGN1A6NI15 193 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 A8MZ25 164 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 SHOXO15266 292 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 CSN3P07498 182 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 DYRK1AQ13627 763 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 HAGHQ16775 308 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 IDO2Q6ZQW0 420 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.3□□□□□ -0.44
CLN3-246ENST00000636228 NRG4Q8WWG1 115 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 PHB2Q99623 299 aa12.3□□□□□ -0.44
CLN3-246ENST00000636228 CSMD3Q7Z407 3707 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms