RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	CX3CL1	P78423	397 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	NDP	Q00604	133 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	CNIH2	Q6PI25	160 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	PDPN	Q86YL7	162 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	CROCCP3	Q8IVE0	287 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	ZNF695	Q8IW36	515 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	GVQW1	Q8N7I0	195 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	OR13F1	Q8NGS4	319 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	AUNIP	Q9H7T9	357 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	METTL1	Q9UBP6	276 aa	Known RBP	11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	ZNF580	Q9UK33	172 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179	FBXO7	Q9Y3I1	522 aa		11.12	□□□□□ -0.63
PNKP-223	ENST00000629179		A0A0A6YYH2	397 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	TRAV41	A0A0B4J266	112 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179		A6NJ64	397 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	TMEM127	O75204	238 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	PRB2	P02812	416 aa	Predicted RBP	11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	CTXN2	P0C2S0	81 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	OR5H8	P0DN80	308 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	PPIF	P30405	207 aa	Known RBP	11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	THBS3	P49746	956 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	VBP1	P61758	197 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	KPRP	Q5T749	579 aa	Predicted RBP	11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	ZNF660	Q6AZW8	331 aa	Predicted RBP	11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	RNF152	Q8N8N0	203 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	BVES	Q8NE79	360 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	FLYWCH2	Q96CP2	140 aa	Known RBP	11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	DUX3	Q96PT4	197 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	TSNAX	Q99598	290 aa	Known RBP	11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	ANXA10	Q9UJ72	324 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	OR2W1	Q9Y3N9	320 aa		11.11	□□□□□ -0.63
PNKP-223	ENST00000629179	IGKV1D-13	A0A0B4J2D9	117 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	SLC25A17	O43808	307 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	IGLV2-23	P01705	113 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	FCER2	P06734	321 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	IGKV1-13	P0DP09	117 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	EGR2	P11161	476 aa	Predicted RBP	11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	PSMB8	P28062	276 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	CDX1	P47902	265 aa	Predicted RBP	11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	LUM	P51884	338 aa	Predicted RBP	11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	ECSCR	Q19T08	205 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	UBE2NL	Q5JXB2	153 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	MRPL41	Q8IXM3	137 aa	Known RBP	11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	SAMD12	Q8N8I0	201 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	LINC00482	Q8N8I6	264 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	BEST4	Q8NFU0	473 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	ABHD5	Q8WTS1	349 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	SLC25A46	Q96AG3	418 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	S100A16	Q96FQ6	103 aa	Known RBP	11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	RAX2	Q96IS3	184 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	NAA50	Q9GZZ1	169 aa	Known RBP	11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	KLK15	Q9H2R5	256 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	TPSG1	Q9NRR2	321 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	A3GALT2	U3KPV4	340 aa		11.1	□□□□□ -0.63
PNKP-223	ENST00000629179	MEIS3P1	A6NDR6	274 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	LINC00473	A8K010	186 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	XRCC3	O43542	346 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	HLA-DQB1	P01920	261 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	SLC6A1	P30531	599 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	DUT	P33316	252 aa	Known RBP	11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	MYCNOS	P40205	109 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	DEFB136	Q30KP8	78 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	HOGA1	Q86XE5	327 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	MINDY2	Q8NBR6	621 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	DDB2	Q92466	427 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	P2RX4	Q99571	388 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	FAM103A1	Q9BTL3	118 aa	Known RBP	11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	NUBP2	Q9Y5Y2	271 aa		11.09	□□□□□ -0.63
PNKP-223	ENST00000629179	SRRM4	A7MD48	611 aa	Known RBP	11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	CCL24	O00175	119 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	SHOX	O15266	292 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	TUSC2	O75896	110 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	SPDEF	O95238	335 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	CA2	P00918	260 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	IGLV1-40	P01703	118 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	LGALS7	P47929	136 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	CRIP2	P52943	208 aa	Predicted RBP	11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	ARPC4	P59998	168 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	TAGLN	Q01995	201 aa	Known RBP	11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	PJVK	Q0ZLH3	352 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	KIAA0141	Q14154	515 aa	Predicted RBP	11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	RTL8B	Q17RB0	113 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	TMEM177	Q53S58	311 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	C19orf54	Q5BKX5	351 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	FOXB2	Q5VYV0	432 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	TMEM65	Q6PI78	240 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	ZNF562	Q6V9R5	426 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	PPP1R27	Q86WC6	154 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	ZNF645	Q8N7E2	425 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	ADTRP	Q96IZ2	230 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179	HARBI1	Q96MB7	349 aa		11.08	□□□□□ -0.64
PNKP-223	ENST00000629179		A0A1W2PN81	502 aa		11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	ARPC1B	O15143	372 aa	Known RBP	11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	SOX15	O60248	233 aa		11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	CRYZL1	O95825	349 aa		11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	IGLV2-14	P01704	120 aa		11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	EIF4E	P06730	217 aa	Known RBP	11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	CRYGB	P07316	175 aa		11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	RRAS	P10301	218 aa		11.07	□□□□□ -0.64
PNKP-223	ENST00000629179	CHRNA7	P36544	502 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms