RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TINAGL1Q9GZM7 467 aaPredicted RBP15.28■□□□□ 0.04
SQSTM1-216ENST00000626660 RANBP3Q9H6Z4 567 aaPredicted RBP15.28■□□□□ 0.04
SQSTM1-216ENST00000626660 NDUFA7O95182 113 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 AKAIN1P0CW23 69 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 RAG2P55895 527 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 AP3S2P59780 193 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 FBLN7Q53RD9 439 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 LINC00299Q6ZSB3 139 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 ZNF383Q8NA42 475 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 ZBTB34Q8NCN2 500 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 OR8H1Q8NGG4 311 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 OR4F5Q8NH21 305 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 C5orf30Q96GV9 206 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 CCL28Q9NRJ3 127 aa15.27■□□□□ 0.04
SQSTM1-216ENST00000626660 ANKRD20A5PA0PJZ0 165 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 NCBP2LA6PVI3 153 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 DUTP33316 252 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 ZNF45Q02386 682 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 FOXL1Q12952 345 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 RTL8BQ17RB0 113 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 LPCAT3Q6P1A2 487 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 Q8N6K4 173 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 GDPD1Q8N9F7 314 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 HSD17B10Q99714 261 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 PRSS22Q9GZN4 317 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 SRRQ9GZT4 340 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 SLC35D1Q9NTN3 355 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 PRELID3BQ9Y3B1 194 aa15.26■□□□□ 0.03
SQSTM1-216ENST00000626660 DISC1C4P0D8 188 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 FGF16O43320 207 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 AMY2AP04746 511 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 RRASP10301 218 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 ZNF66Q6ZN08 573 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 Q6ZSV7 163 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 KCTD9Q7L273 389 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 PDPNQ86YL7 162 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 FXYD6Q9H0Q3 95 aa15.25■□□□□ 0.03
SQSTM1-216ENST00000626660 TMEM89A2RUT3 159 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 TSPAN9O75954 239 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 IGLV2-14P01704 120 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 S100GP29377 79 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 FAUP35544 74 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 INPP1P49441 399 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 LINC00205P59089 165 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 RELBQ01201 579 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 MMDQ15546 238 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 SCGB2B2Q4G0G5 96 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 ARSJQ5FYB0 599 aaPredicted RBP15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 TRIQKQ629K1 86 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 TOMM5Q8N4H5 51 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 OR4D10Q8NGI6 311 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 OR4C16Q8NGL9 310 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 TCTEX1D2Q8WW35 142 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 TAF15Q92804 592 aaKnown RBP eCLIP15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 TRIM63Q969Q1 353 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 BEX1Q9HBH7 125 aa15.24■□□□□ 0.03
SQSTM1-216ENST00000626660 A0A1B0GUS0 222 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 RPS16P62249 146 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 CATR1Q13166 79 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 ZNF818PQ6ZRF7 136 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 CMTM1Q8IZ96 169 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 BVESQ8NE79 360 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 OR2T6Q8NHC8 308 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 S100ZQ8WXG8 99 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 FLYWCH2Q96CP2 140 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 RNF5Q99942 180 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 C16orf95Q9H693 158 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 KIAA1456Q9P272 454 aa15.23■□□□□ 0.03
SQSTM1-216ENST00000626660 LINC00473A8K010 186 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 GPR31O00270 319 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 NBR2O15453 112 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 TNFSF12O43508 249 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 PGAM2P15259 253 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 GNRHRP30968 328 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 UCP3P55916 312 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 ABCA11PQ4W5N1 156 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 ZNF57Q68EA5 555 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 FAAP20Q6NZ36 180 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 C11orf88Q6PI97 169 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 SLC38A6Q8IZM9 456 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 MFSD4AQ8N468 514 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 C5orf56Q8N8D9 126 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 TERB2Q8NHR7 220 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 TSNAXQ99598 290 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 PRRT1Q99946 306 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 RASL11BQ9BPW5 248 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 MCUBQ9NWR8 336 aa15.22■□□□□ 0.03
SQSTM1-216ENST00000626660 KIR2DS2P43631 304 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 F2RL1P55085 397 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 RPL30P62888 115 aaKnown RBP15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 BLCAPP62952 87 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 KLF9Q13886 244 aaPredicted RBP15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 C9orf152Q5JTZ5 239 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 AADACL3Q5VUY0 350 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 LHFPL1Q86WI0 220 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 DEDD2Q8WXF8 326 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 DDB2Q92466 427 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 RBMXL1Q96E39 390 aaKnown RBP15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 ZNF702PQ9H963 129 aa15.21■□□□□ 0.03
SQSTM1-216ENST00000626660 AKIP1Q9NQ31 210 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms