RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 VCX3BQ9H321 246 aa9.2□□□□□ -0.94
UPF3B-204ENST00000619445 TPSG1Q9NRR2 321 aa9.2□□□□□ -0.94
UPF3B-204ENST00000619445 SLC35D1Q9NTN3 355 aa9.2□□□□□ -0.94
UPF3B-204ENST00000619445 RDH8Q9NYR8 311 aa9.2□□□□□ -0.94
UPF3B-204ENST00000619445 OR1A1Q9P1Q5 309 aa9.2□□□□□ -0.94
UPF3B-204ENST00000619445 V9GY05 133 aa9.2□□□□□ -0.94
UPF3B-204ENST00000619445 IGHV4OR15-8A0A075B7B6 117 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 A0A087WW49 117 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 FABP7O15540 132 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 IGKV1-16P04430 117 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 SPNP16150 400 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 SLURP1P55000 103 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 TMEM50BP56557 158 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 RTL8BQ17RB0 113 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 ZNF383Q8NA42 475 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 RAB3CQ96E17 227 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 RBMXL1Q96E39 390 aaKnown RBP9.19□□□□□ -0.94
UPF3B-204ENST00000619445 ADTRPQ96IZ2 230 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 ASCL2Q99929 193 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 HDHD3Q9BSH5 251 aaPredicted RBP9.19□□□□□ -0.94
UPF3B-204ENST00000619445 PARP12Q9H0J9 701 aaKnown RBP9.19□□□□□ -0.94
UPF3B-204ENST00000619445 ALX4Q9H161 411 aaPredicted RBP9.19□□□□□ -0.94
UPF3B-204ENST00000619445 KCNK15Q9H427 330 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 BLOC1S6Q9UL45 172 aa9.19□□□□□ -0.94
UPF3B-204ENST00000619445 AK6Q9Y3D8 172 aaKnown RBP9.19□□□□□ -0.94
UPF3B-204ENST00000619445 METTL21EPA6NDL7 271 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 M0R1X1 148 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 SLC25A17O43808 307 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 CREBL2O60519 120 aaPredicted RBP9.18□□□□□ -0.94
UPF3B-204ENST00000619445 RPS25P62851 125 aaKnown RBP9.18□□□□□ -0.94
UPF3B-204ENST00000619445 SRSF7Q16629 238 aaKnown RBP eCLIP9.18□□□□□ -0.94
UPF3B-204ENST00000619445 TATDN3Q17R31 274 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 C2orf76Q3KRA6 126 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 ANKRD13BQ86YJ7 626 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 DRAXINQ8NBI3 349 aaPredicted RBP9.18□□□□□ -0.94
UPF3B-204ENST00000619445 GRPEL2Q8TAA5 225 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 MUC7Q8TAX7 377 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 USMG5Q96IX5 58 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 MS4A10Q96PG2 267 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 RCHY1Q96PM5 261 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 CLCC1Q96S66 551 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 MGLLQ99685 303 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 CABLES2Q9BTV7 478 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 CCDC90BQ9GZT6 254 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 ZNF355PQ9NSJ1 428 aa9.18□□□□□ -0.94
UPF3B-204ENST00000619445 TNCP24821 2201 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 TRBV6-7A0A0A0MS04 114 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 TRAV1-2A0A0B4J238 106 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 H0Y980 276 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 LDLRAD4O15165 306 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 PROP1O75360 226 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 IGHV3-11P01762 117 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 FRMD6-AS1P0C7T7 363 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 RAB6AP20340 208 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 HSPA13P48723 471 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 TBCEQ15813 527 aaPredicted RBP9.17□□□□□ -0.94
UPF3B-204ENST00000619445 SSX1Q16384 188 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 PLAC9Q5JTB6 97 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 FAM209BQ5JX69 171 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 SGPP2Q8IWX5 399 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 CYYR1Q96J86 154 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 HARBI1Q96MB7 349 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 GFI1Q99684 422 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 FAM103A1Q9BTL3 118 aaKnown RBP9.17□□□□□ -0.94
UPF3B-204ENST00000619445 OR2D2Q9H210 308 aa9.17□□□□□ -0.94
UPF3B-204ENST00000619445 RBM7Q9Y580 266 aaKnown RBP9.17□□□□□ -0.94
UPF3B-204ENST00000619445 IGKV1-6A0A0C4DH72 117 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 A8MZ25 164 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 BET1O15155 118 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 SHOXO15266 292 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 SLC22A5O76082 557 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 IGLV1-51P01701 117 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 FCGR3AP08637 254 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 GALP22466 123 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 CRHBPP24387 322 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 MYL9P24844 172 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 TALDO1P37837 337 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 AQP4P55087 323 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 VMA21Q3ZAQ7 101 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 TMEM177Q53S58 311 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 Q6ZS49 121 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 ZNF367Q7RTV3 350 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 SBSPONQ8IVN8 264 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 OR10R2Q8NGX6 335 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 CASTOR1Q8WTX7 329 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 GINS4Q9BRT9 223 aa9.16□□□□□ -0.94
UPF3B-204ENST00000619445 TMEM272A0A1B0GTI8 110 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 SCGNO76038 276 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 CTXN2P0C2S0 81 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 CLDN12P56749 244 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 FABP5Q01469 135 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 TEX45Q8NA69 505 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 OSR1Q8TAX0 266 aaPredicted RBP9.15□□□□□ -0.94
UPF3B-204ENST00000619445 RSRP1Q9BUV0 290 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 TINAGL1Q9GZM7 467 aaPredicted RBP9.15□□□□□ -0.94
UPF3B-204ENST00000619445 SDHAF2Q9NX18 166 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 SIGLEC8Q9NYZ4 499 aa9.15□□□□□ -0.94
UPF3B-204ENST00000619445 A0A0B4J203 849 aa9.14□□□□□ -0.95
UPF3B-204ENST00000619445 IFITM5A6NNB3 132 aa9.14□□□□□ -0.95
UPF3B-204ENST00000619445 MFNGO00587 321 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms