RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ADARB2-AS1A8MUL3 147 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 TUSC2O75896 110 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 SLC22A5O76082 557 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 FCER2P06734 321 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 ELK1P19419 428 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 SPCS2Q15005 226 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 LIN54Q6MZP7 749 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 SNAPC3Q92966 411 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 FLYWCH2Q96CP2 140 aaKnown RBP13.28□□□□□ -0.28
TRIM28-215ENST00000601150 ZNF580Q9UK33 172 aa13.28□□□□□ -0.28
TRIM28-215ENST00000601150 MRPS7Q9Y2R9 242 aaKnown RBP13.28□□□□□ -0.28
TRIM28-215ENST00000601150 TSSC4Q9Y5U2 329 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-215ENST00000601150 A0A1W2PRX2 142 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 FAM25AB3EWG3 89 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 FAM25CB3EWG5 89 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 FAM25GB3EWG6 89 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 NOL3O60936 208 aaKnown RBP13.27□□□□□ -0.29
TRIM28-215ENST00000601150 SPDEFO95238 335 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 IGKV1-16P04430 117 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 OR5H8P0DN80 308 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 RPS16P62249 146 aaKnown RBP13.27□□□□□ -0.29
TRIM28-215ENST00000601150 CBX3Q13185 183 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 PLGLAQ15195 96 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 RTL8BQ17RB0 113 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 COMMD1Q8N668 190 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 OR5AP2Q8NGF4 316 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 FBXL15Q9H469 300 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 SCOCQ9UIL1 159 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 ANAPC10Q9UM13 185 aa13.27□□□□□ -0.29
TRIM28-215ENST00000601150 IGHV7-81A0A0B4J1V7 117 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 IGKV1D-13A0A0B4J2D9 117 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 IGF1P05019 195 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 IGKV1-13P0DP09 117 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 RRASP10301 218 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 VDAC1P21796 283 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 FCGR2CP31995 323 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 DUTP33316 252 aaKnown RBP13.26□□□□□ -0.29
TRIM28-215ENST00000601150 CDK10Q15131 360 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 PSG5Q15238 335 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 KHDC1LQ5JSQ8 128 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 BVESQ8NE79 360 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 OR4F17Q8NGA8 305 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 R3HDM4Q96D70 268 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 OR4F4Q96R69 305 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 OR51J1Q9H342 316 aa13.26□□□□□ -0.29
TRIM28-215ENST00000601150 METTL1Q9UBP6 276 aaKnown RBP13.26□□□□□ -0.29
TRIM28-215ENST00000601150 NAT1P18440 290 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 AADACP22760 399 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 LGALS7P47929 136 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 TAS2R46P59540 309 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 TEX38Q6PEX7 206 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 SNX29P2Q8IUI4 249 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 GPX8Q8TED1 209 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 DDB2Q92466 427 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 SCPEP1Q9HB40 452 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 PARP11Q9NR21 331 aa13.25□□□□□ -0.29
TRIM28-215ENST00000601150 RBMX2Q9Y388 322 aaKnown RBP13.25□□□□□ -0.29
TRIM28-215ENST00000601150 TRRAPQ9Y4A5 3859 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 LINC00473A8K010 186 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 ATP6V0E1O15342 81 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 PPYP01298 95 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 IGLV2-14P01704 120 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 TMEM177Q53S58 311 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 ZNF660Q6AZW8 331 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-215ENST00000601150 GIMAP1Q8WWP7 306 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 ISOC1Q96CN7 298 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 HARBI1Q96MB7 349 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 ZFP57Q9NU63 452 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 EHFQ9NZC4 300 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 EXTL2Q9UBQ6 330 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 ADAM30Q9UKF2 790 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 PLXNB1O43157 2135 aa13.24□□□□□ -0.29
TRIM28-215ENST00000601150 SULT1C2O00338 296 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 FCN1O00602 326 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 SHOXO15266 292 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 SLC25A17O43808 307 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 PF4V1P10720 104 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 CX3CL1P78423 397 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 CFHR3Q02985 330 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 FOXE3Q13461 319 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 MSMO1Q15800 293 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 KCTD9Q7L273 389 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 OVCH2Q7RTZ1 564 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 OR5H2Q8NGV7 314 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 DYNC2LI1Q8TCX1 351 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 SECTM1Q8WVN6 248 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 HSD17B10Q99714 261 aaKnown RBP13.23□□□□□ -0.29
TRIM28-215ENST00000601150 CCDC59Q9P031 241 aaKnown RBP13.23□□□□□ -0.29
TRIM28-215ENST00000601150 PRELID3BQ9Y3B1 194 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 WSB1Q9Y6I7 421 aa13.23□□□□□ -0.29
TRIM28-215ENST00000601150 TRAV41A0A0B4J266 112 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 H3BMQ9 156 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 RGS5O15539 181 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 TPPPO94811 219 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 CRYZL1O95825 349 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 IGLV2-23P01705 113 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 IGHG4P01861 327 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 PMP2P02689 132 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 FXYD4P59646 89 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 RPL23AP62750 156 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms