RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	PJVK	Q0ZLH3	352 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	C2orf76	Q3KRA6	126 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ANKRD13B	Q86YJ7	626 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	FAM89B	Q8N5H3	189 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	MUC7	Q8TAX7	377 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	FAM3D	Q96BQ1	224 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RHOV	Q96L33	236 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	RNF5	Q99942	180 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ZMAT4	Q9H898	229 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	TPRKB	Q9Y3C4	175 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	STAB2	Q8WWQ8	2551 aa		13.53	□□□□□ -0.24
SHKBP1-223	ENST00000600552	ARPC1B	O15143	372 aa	Known RBP	13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	DENR	O43583	198 aa	Known RBP	13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	APELA	P0DMC3	54 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MAP2K4	P45985	399 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PLA2G7	Q13093	441 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PLAC9	Q5JTB6	97 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	OR56B1	Q8NGI3	324 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MAFIP	Q8WZ33	124 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SLA2	Q9H6Q3	261 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PALMD	Q9NP74	551 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	NKX1-2	Q9UD57	310 aa	Predicted RBP	13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	HSF4	Q9ULV5	492 aa		13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	RBM7	Q9Y580	266 aa	Known RBP	13.52	□□□□□ -0.25
SHKBP1-223	ENST00000600552	RGS10	O43665	173 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ARL6IP5	O75915	188 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	AQP4	P55087	323 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	IRF3	Q14653	427 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	IGSF11	Q5DX21	431 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PDPN	Q86YL7	162 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	POC5	Q8NA72	575 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PTX4	Q96A99	478 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	OR2D2	Q9H210	308 aa		13.51	□□□□□ -0.25
SHKBP1-223	ENST00000600552	FOXI3	A8MTJ6	420 aa	Predicted RBP	13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	GSTT2	P0CG29	244 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	GSTT2B	P0CG30	244 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	CD37	P11049	281 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	TPBG	Q13641	420 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ZFAND6	Q6FIF0	208 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PHB2	Q99623	299 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	GAR1	Q9NY12	217 aa	Known RBP	13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	COA4	Q9NYJ1	87 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	STUB1	Q9UNE7	303 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552		V9GY05	133 aa		13.5	□□□□□ -0.25
SHKBP1-223	ENST00000600552	TMEM272	A0A1B0GTI8	110 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552		J3QRK9	145 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SHOX	O15266	292 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	FABP7	O15540	132 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SPDEF	O95238	335 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	LYL1	P12980	280 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	FABP5	Q01469	135 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	CBX3	Q13185	183 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	TRAM1	Q15629	374 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	CASC10	Q5T4H9	136 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	BVES	Q8NE79	360 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	OR10J5	Q8NHC4	309 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	RAB3C	Q96E17	227 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	HARBI1	Q96MB7	349 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	RANGRF	Q9HD47	186 aa	Predicted RBP	13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ZNF230	Q9UIE0	474 aa	Predicted RBP	13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	RAB22A	Q9UL26	194 aa		13.49	□□□□□ -0.25
SHKBP1-223	ENST00000600552	GNB3	P16520	340 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ZP3	P21754	424 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SYNJ2BP	P57105	145 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MOGAT2	Q3SYC2	334 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SGPP2	Q8IWX5	399 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	OR4A4P	Q8NGN8	299 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SDHAF2	Q9NX18	166 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ADAM30	Q9UKF2	790 aa		13.48	□□□□□ -0.25
SHKBP1-223	ENST00000600552		A0A0G2JLM5	398 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	IGLV2-23	P01705	113 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	IGHV4-30-4	P0DP06	118 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SERPINB10	P48595	397 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	OR10A3	P58181	314 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MLLT11	Q13015	90 aa	Predicted RBP	13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	NRG4	Q8WWG1	115 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MGLL	Q99685	303 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	GINS4	Q9BRT9	223 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552	DUSP21	Q9H596	190 aa		13.47	□□□□□ -0.25
SHKBP1-223	ENST00000600552		A0A0B4J203	849 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MPPED1	O15442	326 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	IGLV1-51	P01701	117 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	FCGR3A	P08637	254 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	PSMA1	P25786	263 aa	Known RBP	13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	TALDO1	P37837	337 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	LGALS7	P47929	136 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	SSBP2	P81877	361 aa	Predicted RBP	13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ARFRP1	Q13795	201 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	RTL8B	Q17RB0	113 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	KCNK7	Q9Y2U2	307 aa		13.46	□□□□□ -0.25
SHKBP1-223	ENST00000600552	MSGN1	A6NI15	193 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	LDLRAD4	O15165	306 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TRBV12-3	P01733	135 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	GADD45A	P24522	165 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	PSMD7	P51665	324 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	TNXA	Q16473	311 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	IDO2	Q6ZQW0	420 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552		Q8N1Y9	231 aa		13.45	□□□□□ -0.26
SHKBP1-223	ENST00000600552	OR10R2	Q8NGX6	335 aa		13.45	□□□□□ -0.26

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