RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ACOT12Q8WYK0 555 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 R3HDM4Q96D70 268 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 S100A16Q96FQ6 103 aaKnown RBP12.66□□□□□ -0.38
TRIM28-213ENST00000598355 OR51J1Q9H342 316 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 FBXL15Q9H469 300 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 SLC35D1Q9NTN3 355 aa12.66□□□□□ -0.38
TRIM28-213ENST00000598355 IGKV1D-13A0A0B4J2D9 117 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 H7C2Y5 167 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 ATP6V0E1O15342 81 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 IGLV2-23P01705 113 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 IGKV1-13P0DP09 117 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 NFYAP23511 347 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-213ENST00000598355 PPIFP30405 207 aaKnown RBP12.65□□□□□ -0.38
TRIM28-213ENST00000598355 SLC6A1P30531 599 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 THBS3P49746 956 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 FOXE3Q13461 319 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 EIF4EBP1Q13541 118 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-213ENST00000598355 GPR107Q5VW38 600 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 LIN54Q6MZP7 749 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 TEX38Q6PEX7 206 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 ETV3LQ6ZN32 361 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 ADTRPQ96IZ2 230 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 ZFP57Q9NU63 452 aa12.65□□□□□ -0.38
TRIM28-213ENST00000598355 A0A1W2PRX2 142 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 LINC00473A8K010 186 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 SLC22A5O76082 557 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 ELANEP08246 267 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 OR5H8P0DN80 308 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 NAT1P18440 290 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 PSMB8P28062 276 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 RORCP51449 518 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 LUMP51884 338 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-213ENST00000598355 PSG5Q15238 335 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 MSMO1Q15800 293 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 TMEM177Q53S58 311 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 TMEM69Q5SWH9 247 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 SAMD5Q5TGI4 173 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 ZNF660Q6AZW8 331 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-213ENST00000598355 OVCH2Q7RTZ1 564 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 GPR141Q7Z602 305 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 WFDC9Q8NEX5 89 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 TSNAXQ99598 290 aaKnown RBP12.64□□□□□ -0.39
TRIM28-213ENST00000598355 FBXO7Q9Y3I1 522 aa12.64□□□□□ -0.39
TRIM28-213ENST00000598355 CRYGBP07316 175 aa12.63□□□□□ -0.39
TRIM28-213ENST00000598355 VDAC1P21796 283 aa12.63□□□□□ -0.39
TRIM28-213ENST00000598355 CX3CL1P78423 397 aa12.63□□□□□ -0.39
TRIM28-213ENST00000598355 SSBP2P81877 361 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-213ENST00000598355 KPRPQ5T749 579 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-213ENST00000598355 MINDY2Q8NBR6 621 aa12.63□□□□□ -0.39
TRIM28-213ENST00000598355 FLYWCH2Q96CP2 140 aaKnown RBP12.63□□□□□ -0.39
TRIM28-213ENST00000598355 BCL7BQ9BQE9 202 aa12.63□□□□□ -0.39
TRIM28-213ENST00000598355 TPSG1Q9NRR2 321 aa12.63□□□□□ -0.39
TRIM28-213ENST00000598355 RBMX2Q9Y388 322 aaKnown RBP12.63□□□□□ -0.39
TRIM28-213ENST00000598355 RBM7Q9Y580 266 aaKnown RBP12.63□□□□□ -0.39
TRIM28-213ENST00000598355 FCN1O00602 326 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 IGLV1-40P01703 118 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 RRASP10301 218 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 EGR2P11161 476 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-213ENST00000598355 LGALS7P47929 136 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 ARPC4P59998 168 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 OR5AP2Q8NGF4 316 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 HARBI1Q96MB7 349 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 PARP11Q9NR21 331 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 NECAP2Q9NVZ3 263 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 COMMD3Q9UBI1 195 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 METTL1Q9UBP6 276 aaKnown RBP12.62□□□□□ -0.39
TRIM28-213ENST00000598355 ADAM30Q9UKF2 790 aa12.62□□□□□ -0.39
TRIM28-213ENST00000598355 DNAH3Q8TD57 4116 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 G3V318 75 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 PPYP01298 95 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 RPLP1P05386 114 aaKnown RBP12.61□□□□□ -0.39
TRIM28-213ENST00000598355 PF4V1P10720 104 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 ZNF182P17025 639 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-213ENST00000598355 ELK1P19419 428 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 CDX1P47902 265 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-213ENST00000598355 RPS16P62249 146 aaKnown RBP12.61□□□□□ -0.39
TRIM28-213ENST00000598355 RTL8BQ17RB0 113 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 MRGPRG-AS1Q2M3A8 158 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 CXorf66Q5JRM2 361 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-213ENST00000598355 KHDC1LQ5JSQ8 128 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 ZNF562Q6V9R5 426 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 C18orf65Q6ZTR6 163 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 TCTEX1D1Q8N7M0 179 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 BVESQ8NE79 360 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 GPX8Q8TED1 209 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 RAB2BQ8WUD1 216 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 AP3S1Q92572 193 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 NUBP2Q9Y5Y2 271 aa12.61□□□□□ -0.39
TRIM28-213ENST00000598355 PRKDCP78527 4128 aaKnown RBP12.6□□□□□ -0.39
TRIM28-213ENST00000598355 TRAV41A0A0B4J266 112 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 MEIS3P1A6NDR6 274 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 SRRM4A7MD48 611 aaKnown RBP12.6□□□□□ -0.39
TRIM28-213ENST00000598355 SLC25A17O43808 307 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 SOX15O60248 233 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 HPGDSO60760 199 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 CA2P00918 260 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 AADACP22760 399 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 FCGR2CP31995 323 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 PRSS3P35030 304 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 RPL30P62888 115 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms