RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SNAPC3Q92966 411 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 IFT46Q9NQC8 304 aa10.91□□□□□ -0.66
UPF1-205ENST00000598209 TSSC4Q9Y5U2 329 aaPredicted RBP10.91□□□□□ -0.66
UPF1-205ENST00000598209 IGHV7-81A0A0B4J1V7 117 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 IGKV1D-13A0A0B4J2D9 117 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 TUSC2O75896 110 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 IGKV1-13P0DP09 117 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 ELK1P19419 428 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 PRSS3P35030 304 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 SPCS2Q15005 226 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 PLGLAQ15195 96 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 COMMD1Q8N668 190 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 OR4F17Q8NGA8 305 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 RAB2BQ8WUD1 216 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 FLYWCH2Q96CP2 140 aaKnown RBP10.9□□□□□ -0.66
UPF1-205ENST00000598209 R3HDM4Q96D70 268 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 ADTRPQ96IZ2 230 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 OR4F4Q96R69 305 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 TSNAXQ99598 290 aaKnown RBP10.9□□□□□ -0.66
UPF1-205ENST00000598209 GON7Q9BXV9 100 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 OR51J1Q9H342 316 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 NECAP2Q9NVZ3 263 aa10.9□□□□□ -0.66
UPF1-205ENST00000598209 MRPS7Q9Y2R9 242 aaKnown RBP10.9□□□□□ -0.66
UPF1-205ENST00000598209 VWFP04275 2813 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 FAM25AB3EWG3 89 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 FAM25CB3EWG5 89 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 FAM25GB3EWG6 89 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 SLC22A5O76082 557 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 SPDEFO95238 335 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 IGF1P05019 195 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 OR5H8P0DN80 308 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 VDAC1P21796 283 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 FCGR2CP31995 323 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 DUTP33316 252 aaKnown RBP10.89□□□□□ -0.67
UPF1-205ENST00000598209 TMBIM6P55061 237 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 TAGLNQ01995 201 aaKnown RBP10.89□□□□□ -0.67
UPF1-205ENST00000598209 CBX3Q13185 183 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 PSG5Q15238 335 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 RTL8BQ17RB0 113 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 BVESQ8NE79 360 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 OR5AP2Q8NGF4 316 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 BCL7BQ9BQE9 202 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 PARP11Q9NR21 331 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 METTL1Q9UBP6 276 aaKnown RBP10.89□□□□□ -0.67
UPF1-205ENST00000598209 ZNF580Q9UK33 172 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 ANAPC10Q9UM13 185 aa10.89□□□□□ -0.67
UPF1-205ENST00000598209 RBMX2Q9Y388 322 aaKnown RBP10.89□□□□□ -0.67
UPF1-205ENST00000598209 LINC00473A8K010 186 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 ATP6V0E1O15342 81 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 IGLV2-14P01704 120 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 RRASP10301 218 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 AADACP22760 399 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 CFHR3Q02985 330 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 CDK10Q15131 360 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 TEX38Q6PEX7 206 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 SNX29P2Q8IUI4 249 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 DDB2Q92466 427 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 HARBI1Q96MB7 349 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 SCOCQ9UIL1 159 aa10.88□□□□□ -0.67
UPF1-205ENST00000598209 FCN1O00602 326 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 SHOXO15266 292 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 SLC25A17O43808 307 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 NOL3O60936 208 aaKnown RBP10.87□□□□□ -0.67
UPF1-205ENST00000598209 PPYP01298 95 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 IGLV2-23P01705 113 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 PF4V1P10720 104 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 NAT1P18440 290 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 LGALS7P47929 136 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 RPL23AP62750 156 aaKnown RBP10.87□□□□□ -0.67
UPF1-205ENST00000598209 CX3CL1P78423 397 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 NDPQ00604 133 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 TMEM177Q53S58 311 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 ZNF660Q6AZW8 331 aaPredicted RBP10.87□□□□□ -0.67
UPF1-205ENST00000598209 KCTD9Q7L273 389 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 GPX8Q8TED1 209 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 SECTM1Q8WVN6 248 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 CLCC1Q96S66 551 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 SCPEP1Q9HB40 452 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 TPSG1Q9NRR2 321 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 ZFP57Q9NU63 452 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 EHFQ9NZC4 300 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 WSB1Q9Y6I7 421 aa10.87□□□□□ -0.67
UPF1-205ENST00000598209 G3V318 75 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 CRYZL1O95825 349 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 CA2P00918 260 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 IGHG4P01861 327 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 PMP2P02689 132 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 TAS2R46P59540 309 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 FXYD4P59646 89 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 RPL30P62888 115 aaKnown RBP10.86□□□□□ -0.67
UPF1-205ENST00000598209 FOXE3Q13461 319 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 CXorf66Q5JRM2 361 aaPredicted RBP10.86□□□□□ -0.67
UPF1-205ENST00000598209 LCNL1Q6ZST4 164 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 OR5H2Q8NGV7 314 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 ABHD5Q8WTS1 349 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 GIMAP1Q8WWP7 306 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 HSD17B10Q99714 261 aaKnown RBP10.86□□□□□ -0.67
UPF1-205ENST00000598209 SLC5A7Q9GZV3 580 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 CCL28Q9NRJ3 127 aa10.86□□□□□ -0.67
UPF1-205ENST00000598209 EXTL2Q9UBQ6 330 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms