RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 SPCS2Q15005 226 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 CDK10Q15131 360 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 RTL8BQ17RB0 113 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 STPG2Q8N412 459 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 CITED2Q99967 270 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 ADAM30Q9UKF2 790 aa13.66□□□□□ -0.22
SHKBP1-212ENST00000596163 MEIS3P1A6NDR6 274 aa13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 SPDEFO95238 335 aa13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 CNTFRP26992 372 aa13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 TAS2R46P59540 309 aa13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 GIMAP1Q8WWP7 306 aa13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 NOL4LQ96MY1 436 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 ZNF580Q9UK33 172 aa13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 TSSC4Q9Y5U2 329 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-212ENST00000596163 RGS5O15539 181 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 FCER2P06734 321 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 NAT1P18440 290 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 VDAC1P21796 283 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 DUTP33316 252 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 MSMO1Q15800 293 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 NSUN5P1Q3KNT7 163 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 SNX29P2Q8IUI4 249 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 ZBTB34Q8NCN2 500 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 BVESQ8NE79 360 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 OR4F17Q8NGA8 305 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 OR5H2Q8NGV7 314 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 GPX8Q8TED1 209 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 SNAPC3Q92966 411 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 RBMXL1Q96E39 390 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 OR4F4Q96R69 305 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 CCDC59Q9P031 241 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 EXTL2Q9UBQ6 330 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 ANAPC10Q9UM13 185 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 RBMX2Q9Y388 322 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 PRELID3BQ9Y3B1 194 aa13.64□□□□□ -0.23
SHKBP1-212ENST00000596163 LINC01548A6NM66 108 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 PPYP01298 95 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 IGF1P05019 195 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 LINC00205P59089 165 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 PSG5Q15238 335 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 ZNF660Q6AZW8 331 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 TEX38Q6PEX7 206 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 ZNF329Q86UD4 541 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 DYNC2LI1Q8TCX1 351 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 BORCS5Q969J3 196 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 ISOC1Q96CN7 298 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 HSD17B10Q99714 261 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 HSPB9Q9BQS6 159 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 OR51J1Q9H342 316 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 FBXL15Q9H469 300 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 EHFQ9NZC4 300 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 METTL1Q9UBP6 276 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 LINC00527Q9UJ94 153 aa13.63□□□□□ -0.23
SHKBP1-212ENST00000596163 CCDC160A6NGH7 325 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 H3BMQ9 156 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 SHOXO15266 292 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 IGKV1-16P04430 117 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 AADACP22760 399 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 RCVRNP35243 200 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 HERV-K104P61576 105 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 TMEM177Q53S58 311 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 DHRS11Q6UWP2 260 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 ZNF66Q6ZN08 573 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 OVCH2Q7RTZ1 564 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 FAM110DQ8TAY7 271 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 SECTM1Q8WVN6 248 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 C5orf30Q96GV9 206 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 ZFP57Q9NU63 452 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 RABL2AQ9UBK7 228 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 RABL2BQ9UNT1 228 aa13.62□□□□□ -0.23
SHKBP1-212ENST00000596163 IGHV7-81A0A0B4J1V7 117 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 IGKV1D-13A0A0B4J2D9 117 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 PMP2P02689 132 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 IGKV1-13P0DP09 117 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 TMEM267Q0VDI3 215 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 DYRK1AQ13627 763 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 KHDC1LQ5JSQ8 128 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 KCTD9Q7L273 389 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 OR6F1Q8NGZ6 308 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 OSR1Q8TAX0 266 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 DDB2Q92466 427 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 R3HDM4Q96D70 268 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 HARBI1Q96MB7 349 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 SLC5A7Q9GZV3 580 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 PARP11Q9NR21 331 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 CEPT1Q9Y6K0 416 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 NBEAL1Q6ZS30 2694 aa13.61□□□□□ -0.23
SHKBP1-212ENST00000596163 CTDSP2O14595 271 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 TSPAN15O95858 294 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 ELANEP08246 267 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 VMA21Q3ZAQ7 101 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 ACTBL2Q562R1 376 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 TCTEX1D4Q5JR98 221 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 CXorf66Q5JRM2 361 aaPredicted RBP13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 HIST2H2BDQ6DRA6 164 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 C10orf99Q6UWK7 81 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 ZNF562Q6V9R5 426 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 DCUN1D5Q9BTE7 237 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 CCL28Q9NRJ3 127 aa13.6□□□□□ -0.23
SHKBP1-212ENST00000596163 TET2Q6N021 2002 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms