RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ADTRPQ96IZ2 230 aa11.97□□□□□ -0.49
SHKBP1-211ENST00000595945 ST6GAL2Q96JF0 529 aa11.97□□□□□ -0.49
SHKBP1-211ENST00000595945 C18orf12Q96KH6 178 aa11.97□□□□□ -0.49
SHKBP1-211ENST00000595945 MGAT4CQ9UBM8 478 aa11.97□□□□□ -0.49
SHKBP1-211ENST00000595945 BUB1B-PAK6H3BSN5 160 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 RBFOX2O43251 390 aaKnown RBP eCLIP11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 IGKV1-39P01597 117 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 IGKV1D-39P04432 117 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 CT45A6P0DMU7 189 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 CT45A5P0DMU8 189 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 CT45A7P0DMV0 189 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 IGHV4-31P0DP07 118 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 IL3RAP26951 378 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 SRSF4Q08170 494 aaKnown RBP11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 AKAP14Q86UN6 197 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 ZNF383Q8NA42 475 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 UXS1Q8NBZ7 420 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 OR5M8Q8NGP6 311 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 TCTEX1D2Q8WW35 142 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 RAB18Q9NP72 206 aa11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 AMMECR1Q9Y4X0 333 aaPredicted RBP11.96□□□□□ -0.49
SHKBP1-211ENST00000595945 DUXBA0A1W2PPF3 345 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 GOSR2O14653 212 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 OR2A4O95047 310 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 GATA3P23771 443 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 KIR2DS2P43631 304 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 UBE2E1P51965 193 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 DIAPH2-AS1Q14236 149 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 TMEM249Q2WGJ8 235 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 LDLRAD2Q5SZI1 272 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 DCAF12L2Q5VW00 463 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 SPAG16Q8N0X2 631 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 DRAXINQ8NBI3 349 aaPredicted RBP11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 OR2A7Q96R45 310 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 NABP2Q9BQ15 211 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 PCGF1Q9BSM1 259 aa11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 MRPL20Q9BYC9 149 aaKnown RBP11.95□□□□□ -0.5
SHKBP1-211ENST00000595945 VPS13CQ709C8 3753 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 RAMP3O60896 148 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 PFDN1O60925 122 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 ADAP1O75689 374 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 CCNKO75909 580 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 SIX6O95475 246 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 ARG1P05089 322 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 RPA2P15927 270 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 ZNF16P17020 682 aaPredicted RBP11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 LPAR6P43657 344 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 GZMKP49863 264 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 H2BFSP57053 126 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 CD300CQ08708 224 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 ZNF816Q0VGE8 651 aaPredicted RBP11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 TMEM268Q5VZI3 342 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 MAPK1IP1LQ8NDC0 245 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 OR5AN1Q8NGI8 311 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 CD300LFQ8TDQ1 290 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 RBPMSQ93062 196 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 ZNF436Q9C0F3 470 aaPredicted RBP11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 HIF1ANQ9NWT6 349 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 PRELID3BQ9Y3B1 194 aa11.94□□□□□ -0.5
SHKBP1-211ENST00000595945 A8MV72 311 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 CCSO14618 274 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 SERPINE2P07093 398 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 HOXB5P09067 269 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 GIPP09681 153 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 P0C879 139 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 HTR1DP28221 377 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 TAGLNQ01995 201 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 TPTE2P1Q5T6R2 138 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 MINOS1Q5TGZ0 78 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 GGNBP1Q5YKI7 109 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 LYZL2Q7Z4W2 148 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 TGIF2LXQ8IUE1 241 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 ZNF695Q8IW36 515 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 SLC35G3Q8N808 338 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 ASB13Q8WXK3 278 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 LHX4Q969G2 390 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 AJUBAQ96IF1 538 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 RANGRFQ9HD47 186 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 DPM3Q9P2X0 92 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 TBL2Q9Y4P3 447 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 AUP1Q9Y679 476 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 MINOS1-NBL1R4GNA1 71 aa11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 TET2Q6N021 2002 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-211ENST00000595945 PIGBOS1A0A0B4J2F0 54 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 CENPVL3A0A0U1RRI6 287 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 LEUTXA8MZ59 168 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 H0YJW9 148 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 J3QLI3 93 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 TXNL1O43396 289 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 FCGR3BO75015 233 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 S1PR2O95136 353 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 GAPDHP04406 335 aaKnown RBP11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 CD83Q01151 205 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 IL15RAQ13261 267 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 NMSQ5H8A3 153 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 OR2B11Q5JQS5 317 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 LHFPL4Q7Z7J7 247 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 TCTE3Q8IZS6 198 aa11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 WDR89Q96FK6 387 aaPredicted RBP11.92□□□□□ -0.5
SHKBP1-211ENST00000595945 SEC22AQ96IW7 307 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms