RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 DDIT4LQ96D03 193 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 MMABQ96EY8 250 aaPredicted RBP3.5□□□□□ -1.85
LIG3-211ENST00000588713 Q96M66 194 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 GPER1Q99527 375 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 ATP5SQ99766 215 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 PSMG3Q9BT73 122 aaPredicted RBP3.5□□□□□ -1.85
LIG3-211ENST00000588713 SFXN3Q9BWM7 321 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 PARD6GQ9BYG4 376 aaPredicted RBP3.5□□□□□ -1.85
LIG3-211ENST00000588713 VN1R1Q9GZP7 353 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 CHRNA10Q9GZZ6 450 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 PARP12Q9H0J9 701 aaKnown RBP3.5□□□□□ -1.85
LIG3-211ENST00000588713 SLC2A9Q9NRM0 540 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 AURKAIP1Q9NWT8 199 aaPredicted RBP3.5□□□□□ -1.85
LIG3-211ENST00000588713 ARHGAP21Q5T5U3 1957 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 DNAH9Q9NYC9 4486 aa3.5□□□□□ -1.85
LIG3-211ENST00000588713 A0A0U1RQV5 110 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 IGSF23A1L1A6 192 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 XKRY2A2RUG3 117 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 LRP5LA4QPB2 252 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 DHRS7CA6NNS2 312 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 H0YIG0 161 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 C16orf97H3BN30 126 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 SDCBPO00560 298 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 TP53I11O14683 189 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 TSPAN2O60636 221 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 CYTIPO60759 359 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 LY6HO94772 140 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 DIRAS3O95661 229 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 HRASP01112 189 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 PGA4P0DJD7 388 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 PGA5P0DJD9 388 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 TMEM225BP0DP42 221 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 OMGP23515 440 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 NKX2-1P43699 371 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 SLC37A1P57057 533 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 ZNF121P58317 390 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 TAS2R30P59541 319 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 ERVFC1-1P60608 527 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 UBE2NP61088 152 aaKnown RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 HERV-K104P61576 105 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 RPL23AP62750 156 aaKnown RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 VAMP2P63027 116 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 LCN2P80188 198 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 POU3F1Q03052 451 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 FMODQ06828 376 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 CD69Q07108 199 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 PLCXD2Q0VAA5 305 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 THEM4Q5T1C6 240 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 C1orf194Q5T5A4 169 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 KPRPQ5T749 579 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 NCR3LG1Q68D85 454 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 BTNL3Q6UXE8 466 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 CMTM1Q8IZ96 169 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 ZNF664Q8N3J9 261 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 PRR18Q8N4B5 295 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 SLC35G3Q8N808 338 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 OR4X1Q8NH49 305 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 OR51E1Q8TCB6 317 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 C11orf40Q8WZ69 217 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 IL22RA2Q969J5 263 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 SPSB1Q96BD6 273 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 ANAPC16Q96DE5 110 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 BSCL2Q96G97 398 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 ZNF845Q96IR2 970 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 FOXN4Q96NZ1 517 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 OR5B12Q96R08 314 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 IMMP2LQ96T52 175 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 RARRES2Q99969 163 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 C20orf144Q9BQM9 153 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 PIMREGQ9BSJ6 248 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 CABLES2Q9BTV7 478 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 SNHG12Q9BXW3 62 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 KRTAP4-9Q9BYQ8 210 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 NXF5Q9H1B4 397 aaKnown RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 PLK3Q9H4B4 646 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 BANF2Q9H503 90 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 ELL3Q9HB65 397 aaPredicted RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 ZNF286AQ9HBT8 521 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 SDF2L1Q9HCN8 221 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 GLRX2Q9NS18 164 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 MYOTQ9UBF9 498 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 NAT8Q9UHE5 227 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 MCTS1Q9ULC4 181 aaKnown RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 GAB2Q9UQC2 676 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 VDAC3Q9Y277 283 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 POLR1DQ9Y2S0 133 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 MRPS18CQ9Y3D5 142 aaKnown RBP3.49□□□□□ -1.85
LIG3-211ENST00000588713 GOLT1BQ9Y3E0 138 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 URGCP-MRPS24S4R325 110 aa3.49□□□□□ -1.85
LIG3-211ENST00000588713 IGKV3D-11A0A0A0MRZ8 115 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 IGKV1-9A0A0C4DH69 117 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 A0A1B0GV50 99 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 A0A1W2PP11 408 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 C17orf105B2RV13 164 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM250H0YL14 139 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 H7BYZ3 331 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 SSSCA1O60232 199 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 DHRS3O75911 302 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 KBTBD11O94819 623 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms