RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 NECAP2Q9NVZ3 263 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 SDHAF2Q9NX18 166 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 COMMD3Q9UBI1 195 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 PRELID3BQ9Y3B1 194 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 OR2W1Q9Y3N9 320 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 A3GALT2U3KPV4 340 aa8.58□□□□□ -1.04
CLIP3-203ENST00000586457 XRCC3O43542 346 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 SPDEFO95238 335 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 IGF1P05019 195 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 TGFBR1P36897 503 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 GNB1P62873 340 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 PSG5Q15238 335 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 ECSCRQ19T08 205 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 GPR141Q7Z602 305 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 H1FOOQ8IZA3 346 aaPredicted RBP8.57□□□□□ -1.04
CLIP3-203ENST00000586457 ZNF383Q8NA42 475 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 BVESQ8NE79 360 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 ACOT12Q8WYK0 555 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 SLC25A46Q96AG3 418 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 RBMXL1Q96E39 390 aaKnown RBP8.57□□□□□ -1.04
CLIP3-203ENST00000586457 MRPS26Q9BYN8 205 aaKnown RBP8.57□□□□□ -1.04
CLIP3-203ENST00000586457 GPR61Q9BZJ8 451 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 AUNIPQ9H7T9 357 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 ZNF355PQ9NSJ1 428 aa8.57□□□□□ -1.04
CLIP3-203ENST00000586457 MRPS7Q9Y2R9 242 aaKnown RBP8.57□□□□□ -1.04
CLIP3-203ENST00000586457 IGKV1D-8A0A087WSZ0 117 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 ADARB2-AS1A8MUL3 147 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 FAM25AB3EWG3 89 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 FAM25CB3EWG5 89 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 FAM25GB3EWG6 89 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 ATP6V0E1O15342 81 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 SLC25A17O43808 307 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 NOL3O60936 208 aaKnown RBP8.56□□□□□ -1.04
CLIP3-203ENST00000586457 ACTL6BO94805 426 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 NDUFA3O95167 84 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 DUS4LO95620 317 aaKnown RBP8.56□□□□□ -1.04
CLIP3-203ENST00000586457 RPLP1P05386 114 aaKnown RBP8.56□□□□□ -1.04
CLIP3-203ENST00000586457 FCER2P06734 321 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 FCGR2CP31995 323 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 PRSS3P35030 304 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 MYCNOSP40205 109 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 CDX1P47902 265 aaPredicted RBP8.56□□□□□ -1.04
CLIP3-203ENST00000586457 NCS1P62166 190 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 CX3CL1P78423 397 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 VMA21Q3ZAQ7 101 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 GPR107Q5VW38 600 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 ZNF562Q6V9R5 426 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 C8orf86Q6ZUL3 223 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 PPP1R27Q86WC6 154 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 HOGA1Q86XE5 327 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 ZNF645Q8N7E2 425 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 TCTEX1D1Q8N7M0 179 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 OR13F1Q8NGS4 319 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 SLC25A38Q96DW6 304 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 HARBI1Q96MB7 349 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 PHB2Q99623 299 aa8.56□□□□□ -1.04
CLIP3-203ENST00000586457 MCRIP2Q9BUT9 160 aaKnown RBP8.56□□□□□ -1.04
CLIP3-203ENST00000586457 IGHV7-81A0A0B4J1V7 117 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 A0A1W2PN81 502 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 MEIS3P1A6NDR6 274 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 G3V4G9 280 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 SSX5O60225 188 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 CREBL2O60519 120 aaPredicted RBP8.55□□□□□ -1.04
CLIP3-203ENST00000586457 IGHG4P01861 327 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 HLA-DQB1P01920 261 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 IGKV1-16P04430 117 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 CHRNA7P36544 502 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 LINC00205P59089 165 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 HERV-K104P61576 105 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 FXYD3Q14802 87 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 ACTBL2Q562R1 376 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 OXLD1Q5BKU9 147 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 UNQ5815/PRO19632Q6UWF5 114 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 LCNL1Q6ZST4 164 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 KCTD9Q7L273 389 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 GRPEL2Q8TAA5 225 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 SECTM1Q8WVN6 248 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 TCTEX1D2Q8WW35 142 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 BORCS5Q969J3 196 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 RCC1LQ96I51 464 aaKnown RBP8.55□□□□□ -1.04
CLIP3-203ENST00000586457 CMTM3Q96MX0 182 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 AIFM2Q9BRQ8 373 aa8.55□□□□□ -1.04
CLIP3-203ENST00000586457 ZMAT5Q9UDW3 170 aaKnown RBP8.55□□□□□ -1.04
CLIP3-203ENST00000586457 FOXA2Q9Y261 457 aaPredicted RBP8.55□□□□□ -1.04
CLIP3-203ENST00000586457 TRIM64CA6NLI5 447 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 G3V318 75 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 CCL24O00175 119 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 FCN1O00602 326 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 MPPED1O15442 326 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 FCGR3BO75015 233 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 CRYZL1O95825 349 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 CA2P00918 260 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 APOA1P02647 267 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 IGLL1P15814 213 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 TAS2R20P59543 309 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 FXYD4P59646 89 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 CDK10Q15131 360 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 PYHIN1Q6K0P9 492 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 REC114Q7Z4M0 266 aa8.54□□□□□ -1.04
CLIP3-203ENST00000586457 ANKRD13BQ86YJ7 626 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms