RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ZNF134P52741 427 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 PAX9P55771 341 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 BRWD1-AS2P59051 145 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 CT45A1Q5HYN5 189 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 OR2B11Q5JQS5 317 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 ZNF439Q8NDP4 499 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 CT45A3Q8NHU0 189 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 ZNF714Q96N38 554 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 S1PR3Q99500 378 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 HSPB7Q9UBY9 170 aa11.71□□□□□ -0.54
LIG3-205ENST00000585941 ADGRG4Q8IZF6 3080 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 MED19A0JLT2 244 aaPredicted RBP11.7□□□□□ -0.54
LIG3-205ENST00000585941 RAB19A4D1S5 217 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 ZNF705EA8MWA4 302 aaPredicted RBP11.7□□□□□ -0.54
LIG3-205ENST00000585941 A8MXK9 166 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 KRBOX1C9JBD0 128 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 TXNL1O43396 289 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 PROP1O75360 226 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 DFFBO76075 338 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 TMEM50AO95807 157 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 SULT1A1P50225 295 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 RAB5CP51148 216 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 TNFRSF9Q07011 255 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 IZUMO4Q1ZYL8 232 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 MIDNQ504T8 468 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 NCR3LG1Q68D85 454 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 HEPN1Q6WQI6 88 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 OR1S2Q8NGQ3 325 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 MARC2Q969Z3 335 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 RAB1BQ9H0U4 201 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 WFDC1Q9HC57 220 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 TPRP12270 2363 aaKnown RBP11.7□□□□□ -0.54
LIG3-205ENST00000585941 ITPR1Q14643 2758 aa11.7□□□□□ -0.54
LIG3-205ENST00000585941 PKD1L2Q7Z442 2459 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 MARCH11A6NNE9 402 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 ZG16O60844 167 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 FCGR3BO75015 233 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 SPP1P10451 314 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 ERVK-16P61578 105 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 MRPS11P82912 194 aaKnown RBP11.69□□□□□ -0.54
LIG3-205ENST00000585941 UQCC3Q6UW78 93 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 CLEC9AQ6UXN8 241 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 SLC25A48Q6ZT89 311 aaKnown RBP11.69□□□□□ -0.54
LIG3-205ENST00000585941 OR4S2Q8NH73 311 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 R3HDM4Q96D70 268 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 BSCL2Q96G97 398 aaPredicted RBP11.69□□□□□ -0.54
LIG3-205ENST00000585941 CIB3Q96Q77 187 aaPredicted RBP11.69□□□□□ -0.54
LIG3-205ENST00000585941 C19orf12Q9NSK7 152 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 CBLN4Q9NTU7 201 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 PSENENQ9NZ42 101 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 YLPM1P49750 1951 aaKnown RBP11.69□□□□□ -0.54
LIG3-205ENST00000585941 HIVEP3Q5T1R4 2406 aa11.69□□□□□ -0.54
LIG3-205ENST00000585941 TRBV23-1A0A0A0MS06 115 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 DVL1O14640 695 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 GPR37O15354 613 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 FBXO24O75426 580 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 SCAF4O95104 1147 aaKnown RBP11.68□□□□□ -0.54
LIG3-205ENST00000585941 NXPH3O95157 252 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 ZP3P21754 424 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 UBE2KP61086 200 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 HBG1P69891 147 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 HBG2P69892 147 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 TMEM200BQ69YZ2 307 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 STPG2Q8N412 459 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 OR5C1Q8NGR4 320 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 GNPNAT1Q96EK6 184 aaPredicted RBP11.68□□□□□ -0.54
LIG3-205ENST00000585941 PARP11Q9NR21 331 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 SAA2-SAA4A0A096LPE2 208 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 TEX46H3BTG2 121 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 SLC31A2O15432 143 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 CST7O76096 145 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 SAA2P0DJI9 122 aaPredicted RBP11.68□□□□□ -0.54
LIG3-205ENST00000585941 NQO2P16083 231 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 DYNLT3P51808 116 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 RPL39P5Q59GN2 51 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 PRAMEF5Q5TYX0 476 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 LYPD2Q6UXB3 125 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 IL34Q6ZMJ4 242 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 CCDC28AQ8IWP9 274 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 LYG1Q8N1E2 194 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 C8orf31Q8N9H6 132 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 DDB2Q92466 427 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 H1FXQ92522 213 aaKnown RBP11.68□□□□□ -0.54
LIG3-205ENST00000585941 ATP5SQ99766 215 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 MMP26Q9NRE1 261 aa11.68□□□□□ -0.54
LIG3-205ENST00000585941 STRAPQ9Y3F4 350 aaKnown RBP11.68□□□□□ -0.54
LIG3-205ENST00000585941 TRIM77I1YAP6 450 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 SHOXO15266 292 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 ZNF273Q14593 569 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 CLINT1Q14677 625 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 AARDQ4LEZ3 155 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 ODF3L1Q8IXM7 274 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 ZNF295-AS1Q8N0V1 137 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 NEU4Q8WWR8 484 aaPredicted RBP11.67□□□□□ -0.54
LIG3-205ENST00000585941 LEAP2Q969E1 77 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 ZNF251Q9BRH9 671 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 RBKSQ9H477 322 aa11.67□□□□□ -0.54
LIG3-205ENST00000585941 ABCA4P78363 2273 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 B8ZZF3 427 aa11.66□□□□□ -0.54
LIG3-205ENST00000585941 UMAD1C9J7I0 102 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms