RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	CFHR3	Q02985	330 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	MZT2A	Q6P582	158 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	OR5AP2	Q8NGF4	316 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	DDB2	Q92466	427 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	ADTRP	Q96IZ2	230 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	LINC00527	Q9UJ94	153 aa		12.79	□□□□□ -0.36
ERBB2-222	ENST00000584908	IGHV7-81	A0A0B4J1V7	117 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	IGKV1D-13	A0A0B4J2D9	117 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	IGLV2-14	P01704	120 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	IGKV1-13	P0DP09	117 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	ELK1	P19419	428 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	ARPC4	P59998	168 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	SPCS2	Q15005	226 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	NSUN5P1	Q3KNT7	163 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	LIN54	Q6MZP7	749 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	ZNF329	Q86UD4	541 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	CLVS1	Q8IUQ0	354 aa	Predicted RBP	12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	RNF152	Q8N8N0	203 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	FLYWCH2	Q96CP2	140 aa	Known RBP	12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	TSNAX	Q99598	290 aa	Known RBP	12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	OR51J1	Q9H342	316 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	SLC35D1	Q9NTN3	355 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	NECAP2	Q9NVZ3	263 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	ADAM30	Q9UKF2	790 aa		12.78	□□□□□ -0.36
ERBB2-222	ENST00000584908	SMIM31	A0A1B0GVY4	71 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	TCRBV4S1A1T	A0A5B7	111 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	LINC00473	A8K010	186 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	HPGDS	O60760	199 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	TPPP	O94811	219 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	OR5H8	P0DN80	308 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	RRAS	P10301	218 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	PRSS3	P35030	304 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	LGALS7	P47929	136 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	CRIP2	P52943	208 aa	Predicted RBP	12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	EIF4EBP1	Q13541	118 aa	Predicted RBP	12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	PSG5	Q15238	335 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	MSMO1	Q15800	293 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	TMEM177	Q53S58	311 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	OR4F17	Q8NGA8	305 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	GPX8	Q8TED1	209 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	GIMAP1	Q8WWP7	306 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	OR4F4	Q96R69	305 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	FBXL15	Q9H469	300 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	SCPEP1	Q9HB40	452 aa		12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	RBMX2	Q9Y388	322 aa	Known RBP	12.77	□□□□□ -0.37
ERBB2-222	ENST00000584908	IGLV2-23	P01705	113 aa		12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	RPS16	P62249	146 aa	Known RBP	12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	CDK10	Q15131	360 aa		12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	ZNF660	Q6AZW8	331 aa	Predicted RBP	12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	TEX38	Q6PEX7	206 aa		12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	OVCH2	Q7RTZ1	564 aa		12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	FAM110D	Q8TAY7	271 aa	Predicted RBP	12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	IFT46	Q9NQC8	304 aa		12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	ZFP57	Q9NU63	452 aa		12.76	□□□□□ -0.37
ERBB2-222	ENST00000584908	MEIS3P1	A6NDR6	274 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	SULT1C2	O00338	296 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	PPY	P01298	95 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	IGHG4	P01861	327 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	CRYGB	P07316	175 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	ELANE	P08246	267 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	PPIF	P30405	207 aa	Known RBP	12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	SLC6A1	P30531	599 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	FCGR2C	P31995	323 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	FOXE3	Q13461	319 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	RTL8B	Q17RB0	113 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	C19orf54	Q5BKX5	351 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	DYNC2LI1	Q8TCX1	351 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	R3HDM4	Q96D70	268 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	METTL1	Q9UBP6	276 aa	Known RBP	12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	TNC	P24821	2201 aa		12.75	□□□□□ -0.37
ERBB2-222	ENST00000584908	NOTCH3	Q9UM47	2321 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	FCN1	O00602	326 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	ATP6V0E1	O15342	81 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	VDAC1	P21796	283 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	AADAC	P22760	399 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	TAS2R46	P59540	309 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	RPL23A	P62750	156 aa	Known RBP	12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	CX3CL1	P78423	397 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	NDP	Q00604	133 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	CBX3	Q13185	183 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	DHRS11	Q6UWP2	260 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	ZNF562	Q6V9R5	426 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	LYSMD2	Q8IV50	215 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	BVES	Q8NE79	360 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	HSD17B10	Q99714	261 aa	Known RBP	12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	CCDC59	Q9P031	241 aa	Known RBP	12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	SCOC	Q9UIL1	159 aa		12.74	□□□□□ -0.37
ERBB2-222	ENST00000584908	SRRM4	A7MD48	611 aa	Known RBP	12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908		J3QRK9	145 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	PSMB8	P28062	276 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	DYRK1A	Q13627	763 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	PLGLA	Q15195	96 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	ZNF66	Q6ZN08	573 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	MINDY2	Q8NBR6	621 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	ZBTB34	Q8NCN2	500 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	OSR1	Q8TAX0	266 aa	Predicted RBP	12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	MYOZ3	Q8TDC0	251 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	ISOC1	Q96CN7	298 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	HARBI1	Q96MB7	349 aa		12.73	□□□□□ -0.37
ERBB2-222	ENST00000584908	MIXL1	Q9H2W2	232 aa		12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms