RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 ZFP41Q8N8Y5 198 aa7.48□□□□□ -1.21
RFFL-208ENST00000581039 APH1BQ8WW43 257 aa7.48□□□□□ -1.21
RFFL-208ENST00000581039 PYDC1Q8WXC3 89 aa7.48□□□□□ -1.21
RFFL-208ENST00000581039 KCTD12Q96CX2 325 aaKnown RBP7.48□□□□□ -1.21
RFFL-208ENST00000581039 SLC29A1Q99808 456 aa7.48□□□□□ -1.21
RFFL-208ENST00000581039 RIMS4Q9H426 269 aaPredicted RBP7.48□□□□□ -1.21
RFFL-208ENST00000581039 TECRQ9NZ01 308 aaKnown RBP7.48□□□□□ -1.21
RFFL-208ENST00000581039 M0R1X1 148 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 BMPR1BO00238 502 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 DYNC1I1O14576 645 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 MPPED1O15442 326 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 IGLV2-23P01705 113 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 CRYGBP07316 175 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 APELAP0DMC3 54 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 FOLR2P14207 255 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 HTR2CP28335 458 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 RPS27AP62979 156 aaKnown RBP7.47□□□□□ -1.21
RFFL-208ENST00000581039 MED21Q13503 144 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 SMN1Q16637 294 aaKnown RBP7.47□□□□□ -1.21
RFFL-208ENST00000581039 OR10K2Q6IF99 312 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 CEMP1Q6PRD7 247 aaPredicted RBP7.47□□□□□ -1.21
RFFL-208ENST00000581039 RPP25LQ8N5L8 163 aaKnown RBP7.47□□□□□ -1.21
RFFL-208ENST00000581039 THRSPQ92748 146 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 PTX4Q96A99 478 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 PGLYRP3Q96LB9 341 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 DERL3Q96Q80 235 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 OVOL2Q9BRP0 275 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 SLC35D1Q9NTN3 355 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 PLEKHJ1Q9NW61 149 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 OR1A1Q9P1Q5 309 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 CLEC2DQ9UHP7 191 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 KLK5Q9Y337 293 aaPredicted RBP7.47□□□□□ -1.21
RFFL-208ENST00000581039 EXOSC1Q9Y3B2 195 aaKnown RBP7.47□□□□□ -1.21
RFFL-208ENST00000581039 PCLOQ9Y6V0 5065 aa7.47□□□□□ -1.21
RFFL-208ENST00000581039 FRAS1Q86XX4 4008 aa7.46□□□□□ -1.21
RFFL-208ENST00000581039 TRBV6-6A0A0A6YYG2 114 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 FAM223BA6NKX1 122 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 RBMXL2O75526 392 aaKnown RBP7.46□□□□□ -1.22
RFFL-208ENST00000581039 WBP4O75554 376 aaKnown RBP7.46□□□□□ -1.22
RFFL-208ENST00000581039 TUSC2O75896 110 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 ATP5HO75947 161 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 OR9G9P0C7N8 305 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 RHOGP84095 191 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 CBX3Q13185 183 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 EXOSC2Q13868 293 aaKnown RBP7.46□□□□□ -1.22
RFFL-208ENST00000581039 FAM223AQ8IWN6 122 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 ADAD2Q8NCV1 583 aaKnown RBP7.46□□□□□ -1.22
RFFL-208ENST00000581039 KCNG3Q8TAE7 436 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 WDR89Q96FK6 387 aaPredicted RBP7.46□□□□□ -1.22
RFFL-208ENST00000581039 TMEM80Q96HE8 168 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 GGTLC1Q9BX51 225 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 TMEM59Q9BXS4 323 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 AKIP1Q9NQ31 210 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 ZC4H2Q9NQZ6 224 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 MGAT4AQ9UM21 535 aa7.46□□□□□ -1.22
RFFL-208ENST00000581039 DIMT1Q9UNQ2 313 aaKnown RBP7.46□□□□□ -1.22
RFFL-208ENST00000581039 LOC102724200A0A096LPH7 203 aaPredicted RBP7.45□□□□□ -1.22
RFFL-208ENST00000581039 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.45□□□□□ -1.22
RFFL-208ENST00000581039 A0A0J9YWU9 116 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 PNMA8CA0A1B0GUJ8 204 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 C2orf70A6NJV1 201 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 SHOXO15266 292 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 NDUFB8O95169 186 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 PRH1P02810 166 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 SCTP09683 121 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 MAPK3P27361 379 aaPredicted RBP7.45□□□□□ -1.22
RFFL-208ENST00000581039 TAS2R43P59537 309 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 HLA-DRB3P79483 266 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 TAGLNQ01995 201 aaKnown RBP7.45□□□□□ -1.22
RFFL-208ENST00000581039 FAM209BQ5JX69 171 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 GLT8D1Q68CQ7 371 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.45□□□□□ -1.22
RFFL-208ENST00000581039 OR52B4Q8NGK2 314 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 HARBI1Q96MB7 349 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 NICN1Q9BSH3 213 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 C9orf16Q9BUW7 83 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 TM2D1Q9BX74 207 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 RDH8Q9NYR8 311 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 ZNF230Q9UIE0 474 aaPredicted RBP7.45□□□□□ -1.22
RFFL-208ENST00000581039 AK3Q9UIJ7 227 aa7.45□□□□□ -1.22
RFFL-208ENST00000581039 SRRM4A7MD48 611 aaKnown RBP7.44□□□□□ -1.22
RFFL-208ENST00000581039 PPP5D1E7EU14 171 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 LGALS9O00182 355 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 GGCTO75223 188 aaKnown RBP7.44□□□□□ -1.22
RFFL-208ENST00000581039 CELP19835 753 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 CBLN1P23435 193 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 TNFRSF9Q07011 255 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 TNXAQ16473 311 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 RTL8BQ17RB0 113 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 ANKRD55Q3KP44 614 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 VMA21Q3ZAQ7 101 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 TMEM177Q53S58 311 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 ZNF57Q68EA5 555 aaPredicted RBP7.44□□□□□ -1.22
RFFL-208ENST00000581039 LYG2Q86SG7 212 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 TEX45Q8NA69 505 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 NECAP1Q8NC96 275 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 ZNF555Q8NEP9 628 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 HDHD3Q9BSH5 251 aaPredicted RBP7.44□□□□□ -1.22
RFFL-208ENST00000581039 Q9N2K0 584 aa7.44□□□□□ -1.22
RFFL-208ENST00000581039 TRBV9A0A0B4J1U6 114 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms