RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 BEND2Q8NDZ0 799 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 TMEM222Q9H0R3 208 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 C7orf69Q9H7B7 122 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 TEX15Q9BXT5 2789 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 ABCA1O95477 2261 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 CSPG4Q6UVK1 2322 aa20.35■□□□□ 0.85
SHMT1-207ENST00000580002 FLNAP21333 2647 aaKnown RBP20.34■□□□□ 0.85
SHMT1-207ENST00000580002 MPTX1A8MV57 137 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 LIAT1Q6ZQX7 453 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 PHB2Q99623 299 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 NEURL2Q9BR09 285 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 CENPVL3A0A0U1RRI6 287 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 H0Y980 276 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 LY6LH3BQJ8 138 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 GOSR2O14653 212 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 HOXB5P09067 269 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 SULT1A3P0DMM9 295 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 SULT1A4P0DMN0 295 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 ZNF816Q0VGE8 651 aaPredicted RBP20.34■□□□□ 0.85
SHMT1-207ENST00000580002 ZNF66Q6ZN08 573 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 LYZL2Q7Z4W2 148 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 ZNF436-AS1Q8NC38 126 aaPredicted RBP20.34■□□□□ 0.85
SHMT1-207ENST00000580002 FAM216AQ8WUB2 273 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 DDB2Q92466 427 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 S1PR3Q99500 378 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 HSD17B10Q99714 261 aaKnown RBP20.34■□□□□ 0.85
SHMT1-207ENST00000580002 MGAT4CQ9UBM8 478 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 AUP1Q9Y679 476 aa20.34■□□□□ 0.85
SHMT1-207ENST00000580002 DBX1A6NMT0 343 aa20.33■□□□□ 0.84
SHMT1-207ENST00000580002 RPA2P15927 270 aa20.33■□□□□ 0.84
SHMT1-207ENST00000580002 UCP1P25874 307 aa20.33■□□□□ 0.84
SHMT1-207ENST00000580002 S100GP29377 79 aa20.33■□□□□ 0.84
SHMT1-207ENST00000580002 SELENOHQ8IZQ5 122 aaKnown RBP20.33■□□□□ 0.84
SHMT1-207ENST00000580002 DYNAPQ8N1N2 210 aa20.33■□□□□ 0.84
SHMT1-207ENST00000580002 SOX21Q9Y651 276 aaPredicted RBP20.33■□□□□ 0.84
SHMT1-207ENST00000580002 TRAV20A0A0B4J274 112 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 FCGR3BO75015 233 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 LPAR6P43657 344 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 ZNF137PP52743 207 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 CD83Q01151 205 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 TMEM268Q5VZI3 342 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 RUSC1-AS1Q66K80 236 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 SPAG16Q8N0X2 631 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 HILPDAQ9Y5L2 63 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 ZFHX3Q15911 3703 aa20.32■□□□□ 0.84
SHMT1-207ENST00000580002 IGHV3-72A0A0B4J1Y9 119 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 AJUBAQ96IF1 538 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 NABP2Q9BQ15 211 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 ACANP16112 2415 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 CDS2O95674 445 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 IGHV4-38-2P0DP08 117 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 ANXA3P12429 323 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 H2BFSP57053 126 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 IZUMO4Q1ZYL8 232 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 PIP4P2Q8N4L2 257 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 COQ8AQ8NI60 647 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 C18orf12Q96KH6 178 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 CHIAQ9BZP6 476 aa20.31■□□□□ 0.84
SHMT1-207ENST00000580002 S1PR2O95136 353 aa20.3■□□□□ 0.84
SHMT1-207ENST00000580002 FAM219AQ8IW50 185 aa20.3■□□□□ 0.84
SHMT1-207ENST00000580002 SLC35G3Q8N808 338 aa20.3■□□□□ 0.84
SHMT1-207ENST00000580002 TMEM56Q96MV1 263 aa20.3■□□□□ 0.84
SHMT1-207ENST00000580002 FYTTD1Q96QD9 318 aaKnown RBP20.3■□□□□ 0.84
SHMT1-207ENST00000580002 RANGRFQ9HD47 186 aaPredicted RBP20.3■□□□□ 0.84
SHMT1-207ENST00000580002 LIN7CQ9NUP9 197 aaKnown RBP20.3■□□□□ 0.84
SHMT1-207ENST00000580002 TMEM56-RWDD3S4R434 201 aa20.3■□□□□ 0.84
SHMT1-207ENST00000580002 A0A0G2JRQ6 117 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 HTR1DP28221 377 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 UBE2E1P51965 193 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 CATR1Q13166 79 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 KLF17Q5JT82 389 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-207ENST00000580002 TGIF2LXQ8IUE1 241 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 SEC22AQ96IW7 307 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 ST6GAL2Q96JF0 529 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 DPM3Q9P2X0 92 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 TRAV40A0A0B4J280 105 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 A0A0B4J2A0 478 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 RNF212BA8MTL3 300 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 FAM25EA8MYX2 175 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 SERPINE2P07093 398 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 TPTE2P1Q5T6R2 138 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 GGNBP1Q5YKI7 109 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 BRD3OSQ6XYD6 125 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 ZNF695Q8IW36 515 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 LGI3Q8N145 548 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 OR10C1Q96KK4 312 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 SHPKQ9UHJ6 478 aa20.29■□□□□ 0.84
SHMT1-207ENST00000580002 IGKV1-16P04430 117 aa20.28■□□□□ 0.84
SHMT1-207ENST00000580002 THBS3P49746 956 aa20.28■□□□□ 0.84
SHMT1-207ENST00000580002 LRTM2Q8N967 370 aa20.28■□□□□ 0.84
SHMT1-207ENST00000580002 OTOGQ6ZRI0 2925 aa20.28■□□□□ 0.84
SHMT1-207ENST00000580002 C13orf42A0A1B0GVH6 325 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 H0YJW9 148 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 SMLR1H3BR10 107 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 PFDN1O60925 122 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 CCNKO75909 580 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 GZMKP49863 264 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 SSX2Q16385 188 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 C11orf88Q6PI97 169 aa20.27■□□□□ 0.84
SHMT1-207ENST00000580002 RPEQ96AT9 228 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms